Variant report

Variant	rs1200000
Chromosome Location	chr13:37702750-37702751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10507444	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1199993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1199994	0.84[EUR][1000 genomes]
rs1199997	1.00[ASN][1000 genomes]
rs1199998	1.00[ASN][1000 genomes]
rs1200001	1.00[ASN][1000 genomes]
rs1200002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200003	1.00[ASN][1000 genomes]
rs1336165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054770	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17054775	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17054789	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17054790	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17054829	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17054838	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17054925	1.00[ASN][1000 genomes]
rs17054972	1.00[ASN][1000 genomes]
rs1924421	1.00[ASN][1000 genomes]
rs2181788	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2769542	1.00[CHB][hapmap]
rs4624036	1.00[ASN][1000 genomes]
rs57719094	1.00[ASN][1000 genomes]
rs59899061	1.00[ASN][1000 genomes]
rs59901477	1.00[ASN][1000 genomes]
rs608385	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs6563506	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs73533924	1.00[ASN][1000 genomes]
rs73543820	1.00[ASN][1000 genomes]
rs8001410	1.00[ASN][1000 genomes]
rs9315475	1.00[CHB][hapmap]
rs9547703	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9547704	1.00[CHB][hapmap]
rs9594184	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs9603124	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9603150	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37700600-37704000	Enhancers	Brain Angular Gyrus	brain
2	chr13:37701000-37702800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:37701000-37702800	Enhancers	Colon Smooth Muscle	Colon
4	chr13:37701000-37702800	Flanking Active TSS	HUVEC	blood vessel
5	chr13:37701000-37707200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr13:37701200-37703400	Enhancers	Rectal Smooth Muscle	rectum
7	chr13:37701800-37702800	Enhancers	NHLF	lung
8	chr13:37701800-37703600	Enhancers	Fetal Lung	lung
9	chr13:37701800-37709200	Weak transcription	Fetal Kidney	kidney
10	chr13:37702000-37702800	Enhancers	Aorta	Aorta
11	chr13:37702200-37702800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:37702200-37702800	Enhancers	NH-A	brain
13	chr13:37702200-37702800	Enhancers	Osteobl	bone
14	chr13:37702200-37703000	Enhancers	Brain Hippocampus Middle	brain
15	chr13:37702200-37703000	Enhancers	Brain Substantia Nigra	brain
16	chr13:37702200-37703000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr13:37702200-37704200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr13:37702200-37707600	Weak transcription	Hela-S3	cervix
19	chr13:37702400-37702800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:37702400-37702800	Enhancers	NHDF-Ad	bronchial
21	chr13:37702400-37703600	Weak transcription	Brain Anterior Caudate	brain
22	chr13:37702400-37703600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr13:37702400-37708200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:37702600-37704000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:37702600-37704000	Enhancers	Right Atrium	heart

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