Variant report

Variant	rs59899061
Chromosome Location	chr13:37636439-37636440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:37636439-37636489	HEK293	kidney:	embryo
2	chr13:37636439-37636489	HRE	kidney:	n/a
3	chr13:37636439-37636489	HAEpiC	amniotic membrane:	n/a
4	chr13:37636439-37636489	SK-N-SH	brain:	n/a
5	chr13:37636439-37636489	U87	brain:	n/a
6	chr13:37636439-37636489	HL-60	blood:	n/a
7	chr13:37636439-37636489	HRCEpiC	kidney:	n/a
8	chr13:37636439-37636489	SKMC	muscle:	n/a
9	chr13:37636439-37636489	HCM	heart:	n/a
10	chr13:37636439-37636489	ECC-1	luminal epithelium:	n/a
11	chr13:37636439-37636489	GM12878	blood:	n/a
12	chr13:37636439-37636489	HCPEpiC	choroid plexus:	n/a
13	chr13:37636439-37636489	HPAEpiC	pulmonary alveolar:	n/a
14	chr13:37636439-37636489	PANC-1	pancreas:	n/a
15	chr13:37636439-37636489	CMK	blood:	n/a
16	chr13:37636439-37636489	Hepatocyte	liver:	n/a
17	chr13:37636439-37636489	NT2-D1	testis:	n/a
18	chr13:37636439-37636489	HepG2	liver:	n/a
19	chr13:37636439-37636489	A549	lung:	n/a
20	chr13:37636439-37636489	HRPEpiC	eye:	n/a
21	chr13:37636439-37636489	MCF10A-Er-Src	breast:	n/a
22	chr13:37636439-37636489	ProgFib	skin:	n/a
23	chr13:37636439-37636489	PFSK-1	brain:	n/a
24	chr13:37636439-37636489	GM12892	blood:	n/a
25	chr13:37636439-37636489	GM12891	blood:	n/a
26	chr13:37636439-37636489	HMEC	breast:	n/a
27	chr13:37636439-37636489	IMR90	lung:	fetal
28	chr13:37636439-37636489	HEEpiC	esophagus:	n/a
29	chr13:37636439-37636489	SK-N-MC	brain:	n/a
30	chr13:37636439-37636489	GM19239	blood:	n/a
31	chr13:37636439-37636489	HUVEC	blood vessel:	n/a
32	chr13:37636439-37636489	Jurkat	blood:	n/a
33	chr13:37636439-37636489	PrEC	prostate:	n/a
34	chr13:37636439-37636489	K562	blood:	n/a
35	chr13:37636439-37636489	HCF	heart:	n/a
36	chr13:37636439-37636489	AG09319	gingival:	n/a
37	chr13:37636439-37636489	LNCaP	prostate:	n/a
38	chr13:37636439-37636489	AG04449	skin:	fetal
39	chr13:37636439-37636489	RPTEC	kidney:	n/a
40	chr13:37636439-37636489	ovcar-3	ovarian:	n/a
41	chr13:37636439-37636489	SAEC	small airway:	n/a
42	chr13:37636439-37636489	SK-N-SH_RA	brain:	n/a
43	chr13:37636439-37636489	H1-hESC	embryonic stem cell:	embryo
44	chr13:37636439-37636489	BJ	skin:	n/a
45	chr13:37636439-37636489	AG04450	lung:	fetal
46	chr13:37636439-37636489	Hela-S3	cervix:	n/a
47	chr13:37636439-37636489	BE2_C	brain:	n/a
48	chr13:37636439-37636489	Caco-2	colon:	n/a
49	chr13:37636439-37636489	AoSMC	blood vessel:	n/a
50	chr13:37636439-37636489	MCF-7	breast:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37634022..37636359-chr13:37636430..37638160,2	MCF-7	breast:

No data

Variant related genes	Relation type
SUPT20H	CpG island

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10507444	1.00[ASN][1000 genomes]
rs1199997	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1199998	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200000	1.00[ASN][1000 genomes]
rs1200001	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200002	1.00[ASN][1000 genomes]
rs1200003	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336165	1.00[ASN][1000 genomes]
rs17054770	1.00[ASN][1000 genomes]
rs17054775	1.00[ASN][1000 genomes]
rs17054789	1.00[ASN][1000 genomes]
rs17054790	1.00[ASN][1000 genomes]
rs17054792	0.89[AFR][1000 genomes]
rs17054829	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054835	0.85[AFR][1000 genomes]
rs17054838	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17054972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924421	1.00[ASN][1000 genomes]
rs2181788	1.00[ASN][1000 genomes]
rs4624036	1.00[ASN][1000 genomes]
rs57719094	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59901477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs608385	1.00[ASN][1000 genomes]
rs6563506	1.00[ASN][1000 genomes]
rs73533924	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73543820	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74045176	0.89[AFR][1000 genomes]
rs7986414	0.92[EUR][1000 genomes]
rs7991565	0.92[EUR][1000 genomes]
rs8001410	1.00[ASN][1000 genomes]
rs9594184	1.00[ASN][1000 genomes]
rs9603124	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3377840	chr13:37631001-37656330	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37634200-37640200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:37634400-37639800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:37634400-37640200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:37634600-37639000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr13:37634600-37639200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:37634600-37643800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:37634800-37640200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:37635000-37638800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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