Variant report
| Variant | rs1336165 |
|---|---|
| Chromosome Location | chr13:37673324-37673325 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:37671782..37674545-chr13:37677973..37680312,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180138 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10507444 | 1.00[ASN][1000 genomes] |
| rs1199993 | 1.00[EUR][1000 genomes] |
| rs1199994 | 0.84[EUR][1000 genomes] |
| rs1199997 | 1.00[ASN][1000 genomes] |
| rs1199998 | 1.00[ASN][1000 genomes] |
| rs1200000 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1200001 | 1.00[ASN][1000 genomes] |
| rs1200002 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1200003 | 1.00[ASN][1000 genomes] |
| rs17054770 | 1.00[ASN][1000 genomes] |
| rs17054775 | 1.00[ASN][1000 genomes] |
| rs17054789 | 1.00[ASN][1000 genomes] |
| rs17054790 | 1.00[ASN][1000 genomes] |
| rs17054829 | 1.00[ASN][1000 genomes] |
| rs17054838 | 1.00[ASN][1000 genomes] |
| rs17054925 | 1.00[ASN][1000 genomes] |
| rs17054972 | 1.00[ASN][1000 genomes] |
| rs1924421 | 1.00[ASN][1000 genomes] |
| rs2181788 | 1.00[ASN][1000 genomes] |
| rs4624036 | 1.00[ASN][1000 genomes] |
| rs57719094 | 1.00[ASN][1000 genomes] |
| rs59899061 | 1.00[ASN][1000 genomes] |
| rs59901477 | 1.00[ASN][1000 genomes] |
| rs608385 | 1.00[ASN][1000 genomes] |
| rs6563506 | 1.00[ASN][1000 genomes] |
| rs73533924 | 1.00[ASN][1000 genomes] |
| rs73543820 | 1.00[ASN][1000 genomes] |
| rs8001410 | 1.00[ASN][1000 genomes] |
| rs9594184 | 1.00[ASN][1000 genomes] |
| rs9603124 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948975 | chr13:37281203-38280430 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:37665400-37678400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr13:37673000-37673600 | Genic enhancers | Primary neutrophils fromperipheralblood | blood |
