Variant report

Variant	rs959485
Chromosome Location	chr1:155349238-155349239
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10158433	1.00[MEX][hapmap]
rs10158907	1.00[MEX][hapmap]
rs11264368	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13373934	1.00[MEX][hapmap]
rs13375379	1.00[MEX][hapmap]
rs16836851	1.00[MEX][hapmap]
rs28491466	1.00[MEX][hapmap]
rs28522441	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6659913	1.00[AMR][1000 genomes]
rs6665660	1.00[MEX][hapmap]
rs6673172	1.00[MEX][hapmap]
rs7519697	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
4	esv1799856	chr1:155305059-155534616	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv1795662	chr1:155305059-155540660	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	esv1795478	chr1:155334933-155510824	Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv1803551	chr1:155334933-155522572	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv872467	chr1:155345641-155377171	Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155296200-155349400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:155297800-155357400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:155299600-155353600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:155303000-155352800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:155306200-155375400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:155312400-155407400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:155323800-155349400	Strong transcription	Fetal Thymus	thymus
8	chr1:155330200-155362400	Weak transcription	Stomach Mucosa	stomach
9	chr1:155333000-155351200	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:155334000-155349600	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr1:155334800-155349600	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr1:155337600-155350000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr1:155337800-155350000	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr1:155337800-155351600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:155338600-155349600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:155340600-155361200	Weak transcription	Fetal Heart	heart
17	chr1:155340600-155362600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:155340600-155364200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr1:155340800-155349600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:155340800-155355600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr1:155340800-155357600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr1:155340800-155361800	Weak transcription	Right Ventricle	heart
23	chr1:155340800-155364800	Weak transcription	Small Intestine	intestine
24	chr1:155341600-155349800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:155341600-155351000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr1:155342000-155350000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:155342000-155351400	Strong transcription	Liver	Liver
28	chr1:155342200-155349800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr1:155342200-155350000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr1:155342200-155353600	Strong transcription	Duodenum Mucosa	Duodenum
31	chr1:155342400-155349800	Strong transcription	HepG2	liver
32	chr1:155342400-155350000	Strong transcription	Dnd41	blood
33	chr1:155342600-155349800	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:155342600-155353600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:155344200-155351000	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr1:155344600-155349600	Weak transcription	NHDF-Ad	bronchial
37	chr1:155345600-155349800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr1:155345600-155350200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:155345600-155403000	Weak transcription	Esophagus	oesophagus
40	chr1:155345800-155349800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:155345800-155351000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr1:155346000-155358000	Weak transcription	Pancreas	Pancrea
43	chr1:155346200-155357600	Weak transcription	Fetal Brain Male	brain
44	chr1:155346400-155357800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr1:155347400-155349600	Weak transcription	Fetal Kidney	kidney
46	chr1:155347400-155361000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr1:155347400-155364000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr1:155347400-155407400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr1:155347600-155349600	Weak transcription	Brain Anterior Caudate	brain
50	chr1:155347600-155350800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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