Variant report

Variant	rs13373934
Chromosome Location	chr1:155448415-155448416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155447924..155449815-chr1:155468121..155471028,2	K562	blood:
2	chr1:155428176..155430935-chr1:155448192..155450755,2	K562	blood:
3	chr1:155439465..155441784-chr1:155447599..155450347,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10157264	0.83[AFR][1000 genomes]
rs10158433	1.00[MEX][hapmap]
rs10158907	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13375379	1.00[MEX][hapmap]
rs16836851	1.00[MEX][hapmap]
rs28491466	1.00[MEX][hapmap]
rs28516425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28850118	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35777901	1.00[ASW][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs57665266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58932176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59249132	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59445713	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60137217	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61103093	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61425508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61518562	0.83[AFR][1000 genomes]
rs6664370	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665660	1.00[MEX][hapmap]
rs6673172	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7519697	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7549232	0.82[YRI][hapmap]
rs959485	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	esv1799856	chr1:155305059-155534616	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1795662	chr1:155305059-155540660	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv1795478	chr1:155334933-155510824	Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1803551	chr1:155334933-155522572	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv1800974	chr1:155367680-155510824	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv872468	chr1:155413304-155549562	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155364400-155450800	Weak transcription	HUVEC	blood vessel
2	chr1:155424600-155462600	Weak transcription	Pancreas	Pancrea
3	chr1:155426400-155455800	Weak transcription	Stomach Mucosa	stomach
4	chr1:155428600-155451600	Weak transcription	Gastric	stomach
5	chr1:155437400-155450600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:155437400-155451400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr1:155437800-155449200	Weak transcription	NHLF	lung
8	chr1:155439800-155449000	Weak transcription	Fetal Kidney	kidney
9	chr1:155441400-155451600	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:155441400-155463600	Weak transcription	Fetal Heart	heart
11	chr1:155441600-155449200	Weak transcription	HMEC	breast
12	chr1:155441600-155449400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr1:155441600-155449800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:155441600-155460200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:155441600-155460400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:155441800-155449600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:155442000-155449800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr1:155442000-155451400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:155442000-155451400	Weak transcription	Ovary	ovary
20	chr1:155442200-155457200	Weak transcription	Esophagus	oesophagus
21	chr1:155442200-155469800	Weak transcription	Small Intestine	intestine
22	chr1:155442400-155449800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr1:155442400-155450000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:155442400-155451200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr1:155442800-155449000	Weak transcription	Osteobl	bone
26	chr1:155443000-155448600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:155443000-155449000	Weak transcription	A549	lung
28	chr1:155443200-155456000	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr1:155443200-155470400	Weak transcription	Right Ventricle	heart
30	chr1:155443400-155449000	Weak transcription	NHDF-Ad	bronchial
31	chr1:155443800-155451000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:155444200-155448600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:155444400-155449000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr1:155444400-155449000	Weak transcription	Fetal Brain Male	brain
35	chr1:155444400-155449200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:155444400-155451400	Weak transcription	Right Atrium	heart
37	chr1:155444600-155449400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr1:155445200-155454000	Weak transcription	Fetal Intestine Small	intestine
39	chr1:155445400-155448600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr1:155445400-155452600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr1:155445400-155452800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:155445600-155449800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr1:155445600-155451000	Weak transcription	Brain Anterior Caudate	brain
44	chr1:155445800-155449800	Weak transcription	Brain Angular Gyrus	brain
45	chr1:155445800-155450000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr1:155445800-155451200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr1:155445800-155451600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr1:155446400-155451000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr1:155446400-155451000	Weak transcription	Brain Hippocampus Middle	brain
50	chr1:155446600-155452400	Strong transcription	HSMM	muscle

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