Variant report

Variant	rs61518562
Chromosome Location	chr1:155309519-155309520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155307177..155310619-chr1:155311074..155315766,6	K562	blood:
2	chr1:155309091..155311499-chr1:155314586..155317520,2	MCF-7	breast:
3	chr1:155306065..155310619-chr1:155311275..155315928,8	K562	blood:

Variant related genes	Relation type
ENSG00000207720	Chromatin interaction
ENSG00000116539	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10157264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10158907	0.83[AFR][1000 genomes]
rs13373934	0.83[AFR][1000 genomes]
rs13375289	0.83[AFR][1000 genomes]
rs16836822	1.00[AMR][1000 genomes]
rs28516425	0.83[AFR][1000 genomes]
rs35826120	1.00[AMR][1000 genomes]
rs57665266	0.83[AFR][1000 genomes]
rs58932176	0.83[AFR][1000 genomes]
rs59249132	0.83[AFR][1000 genomes]
rs60211142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60455144	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60650386	1.00[AMR][1000 genomes]
rs61425508	0.83[AFR][1000 genomes]
rs61732801	1.00[AMR][1000 genomes]
rs7519697	0.83[AFR][1000 genomes]
rs7549232	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8177963	1.00[AMR][1000 genomes]
rs9803672	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
2	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
3	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
4	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
5	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
6	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
8	esv1799856	chr1:155305059-155534616	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	esv1795662	chr1:155305059-155540660	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155296000-155334400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:155296200-155312800	Weak transcription	Fetal Heart	heart
3	chr1:155296200-155349400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:155296600-155348200	Strong transcription	Fetal Stomach	stomach
5	chr1:155296800-155330000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:155297000-155330800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:155297200-155322600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:155297800-155357400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:155298200-155320800	Strong transcription	Fetal Thymus	thymus
10	chr1:155299600-155330200	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr1:155299600-155341200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr1:155299600-155353600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr1:155300800-155311600	Weak transcription	Small Intestine	intestine
14	chr1:155301200-155332200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:155301400-155311800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:155301600-155311600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:155301800-155334800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:155302400-155341200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:155302600-155330800	Strong transcription	Placenta	Placenta
20	chr1:155302800-155315000	Strong transcription	Osteobl	bone
21	chr1:155302800-155316800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:155303000-155317800	Strong transcription	Fetal Brain Female	brain
23	chr1:155303000-155322000	Strong transcription	Thymus	Thymus
24	chr1:155303000-155328000	Strong transcription	Primary T cells from cord blood	blood
25	chr1:155303000-155330400	Strong transcription	Stomach Smooth Muscle	stomach
26	chr1:155303000-155331200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr1:155303000-155332200	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr1:155303000-155334400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:155303000-155341200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr1:155303000-155352800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:155303200-155330800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr1:155303200-155341000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:155303400-155314200	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr1:155303400-155332600	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr1:155303600-155332200	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr1:155304200-155310000	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr1:155304200-155317000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr1:155304200-155332000	Strong transcription	Dnd41	blood
39	chr1:155304400-155310200	Strong transcription	Brain Germinal Matrix	brain
40	chr1:155304400-155318200	Strong transcription	Placenta Amnion	Placenta Amnion
41	chr1:155304400-155330200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr1:155304400-155330800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr1:155304400-155331000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr1:155304400-155337200	Strong transcription	Fetal Muscle Leg	muscle
45	chr1:155304600-155309800	Strong transcription	Primary hematopoietic stem cells	blood
46	chr1:155304600-155310600	Strong transcription	HUVEC	blood vessel
47	chr1:155304600-155314800	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr1:155304600-155318000	Strong transcription	Left Ventricle	heart
49	chr1:155304600-155319400	Strong transcription	Primary B cells from cord blood	blood
50	chr1:155304600-155326000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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