Variant report

Variant	rs35826120
Chromosome Location	chr1:155294914-155294915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:169)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:169 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr1:155292783-155295119	PANC-1	pancreas:	n/a	n/a
2	SMARCB1	chr1:155292890-155295574	Hela-S3	cervix:	n/a	n/a
3	GATA3	chr1:155294818-155295242	T-47D	breast:	n/a	n/a
4	SIN3AK20	chr1:155293464-155295334	MCF-7	breast:	n/a	n/a
5	TFAP2C	chr1:155293013-155295281	Hela-S3	cervix:	n/a	chr1:155294249-155294264
6	ETS1	chr1:155293568-155294986	K562	blood:	n/a	n/a
7	PML	chr1:155292906-155295111	GM12878	blood:	n/a	n/a
8	BCL3	chr1:155294769-155295706	A549	lung:	n/a	n/a
9	MBD4	chr1:155294680-155295037	HepG2	liver:	n/a	n/a
10	CTCF	chr1:155294778-155295362	MCF-7	breast:	n/a	n/a
11	MXI1	chr1:155292900-155295304	Hela-S3	cervix:	n/a	n/a
12	MXI1	chr1:155291862-155295746	IMR90	lung:	n/a	n/a
13	HMGN3	chr1:155292840-155295374	K562	blood:	n/a	n/a
14	POLR2A	chr1:155294860-155295136	GM12892	blood:	n/a	n/a
15	CTCFL	chr1:155294912-155295267	K562	blood:	n/a	n/a
16	TAF1	chr1:155294510-155295217	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr1:155292760-155294916	A549	lung:	n/a	n/a
18	CTCF	chr1:155294800-155294950	Caco-2	colon:	n/a	n/a
19	RFX5	chr1:155294880-155295262	Hela-S3	cervix:	n/a	n/a
20	SIN3A	chr1:155292529-155295504	H1-hESC	embryonic stem cell:	n/a	n/a
21	CTCF	chr1:155294682-155295512	A549	lung:	n/a	n/a
22	POLR2A	chr1:155294667-155295320	A549	lung:	n/a	n/a
23	YY1	chr1:155294862-155295311	H1-hESC	embryonic stem cell:	n/a	n/a
24	RAD21	chr1:155294884-155295294	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr1:155294897-155295261	K562	blood:	n/a	n/a
26	POLR2A	chr1:155292207-155295564	K562	blood:	n/a	n/a
27	ELF1	chr1:155292597-155295379	GM12878	blood:	n/a	chr1:155294785-155294797 chr1:155293586-155293595
28	MAZ	chr1:155292123-155295371	IMR90	lung:	n/a	chr1:155293651-155293661 chr1:155293258-155293268
29	RCOR1	chr1:155294741-155295355	K562	blood:	n/a	n/a
30	MXI1	chr1:155294843-155295287	HepG2	liver:	n/a	n/a
31	GABPA	chr1:155294582-155295433	MCF-7	breast:	n/a	n/a
32	SIN3AK20	chr1:155294877-155295193	HepG2	liver:	n/a	n/a
33	POLR2A	chr1:155285762-155295040	HepG2	liver:	n/a	n/a
34	REST	chr1:155294787-155295191	K562	blood:	n/a	n/a
35	MAFK	chr1:155294887-155295284	Hela-S3	cervix:	n/a	n/a
36	POLR2A	chr1:155292768-155295289	Hela-S3	cervix:	n/a	n/a
37	CTCF	chr1:155294884-155295277	HepG2	liver:	n/a	n/a
38	RAD21	chr1:155294857-155295271	HepG2	liver:	n/a	n/a
39	SMARCC1	chr1:155293737-155295614	Hela-S3	cervix:	n/a	n/a
40	CTCF	chr1:155294868-155295300	H1-hESC	embryonic stem cell:	n/a	n/a
41	MAX	chr1:155292808-155295462	ECC-1	luminal epithelium:	n/a	chr1:155293651-155293661 chr1:155293258-155293268 chr1:155294215-155294225
42	MTA3	chr1:155292746-155295424	GM12878	blood:	n/a	n/a
43	POLR2A	chr1:155294846-155296433	GM12892	blood:	n/a	n/a
44	ELF1	chr1:155293480-155295528	MCF-7	breast:	n/a	chr1:155294785-155294797 chr1:155293586-155293595
45	MAX	chr1:155293676-155294974	GM12878	blood:	n/a	chr1:155294215-155294225
46	UBTF	chr1:155292479-155295463	K562	blood:	n/a	n/a
47	MAX	chr1:155292227-155295582	A549	lung:	n/a	chr1:155293651-155293661 chr1:155293258-155293268 chr1:155294215-155294225
48	GTF2F1	chr1:155294900-155295176	Hela-S3	cervix:	n/a	n/a
49	YY1	chr1:155294090-155295229	A549	lung:	n/a	n/a
50	JUND	chr1:155294806-155295209	A549	lung:	n/a	n/a

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155213005..155216511-chr1:155292470..155296220,4	K562	blood:
2	chr1:155144108..155147671-chr1:155293137..155296373,4	MCF-7	breast:
3	chr1:155245096..155252304-chr1:155290044..155297941,20	MCF-7	breast:
4	chr1:155236269..155241954-chr1:155291931..155295779,5	K562	blood:
5	chr1:155212049..155215843-chr1:155293307..155296856,5	MCF-7	breast:
6	chr1:155057155..155059036-chr1:155292671..155295446,3	MCF-7	breast:
7	chr1:155237070..155244636-chr1:155291827..155295779,11	K562	blood:
8	chr1:155161236..155164985-chr1:155290580..155295192,7	K562	blood:
9	chr1:155230732..155234142-chr1:155291994..155295451,6	MCF-7	breast:
10	chr1:155240682..155244991-chr1:155289682..155296120,12	MCF-7	breast:
11	chr1:155218456..155235751-chr1:155288837..155299195,44	MCF-7	breast:
12	chr1:155177540..155179890-chr1:155292109..155295871,3	K562	blood:
13	chr1:155175738..155179299-chr1:155291621..155295870,7	K562	blood:
14	chr1:155292800..155294999-chr1:155531525..155533061,2	K562	blood:
15	chr1:155213102..155215658-chr1:155292526..155295305,4	MCF-7	breast:
16	chr1:155245749..155249889-chr1:155291182..155296435,17	MCF-7	breast:
17	chr1:155223788..155226914-chr1:155293518..155296850,4	K562	blood:
18	chr1:155291309..155295116-chr1:155530603..155535374,8	MCF-7	breast:
19	chr1:155229082..155234937-chr1:155291248..155296864,8	K562	blood:
20	chr1:155239314..155245036-chr1:155288379..155297041,21	MCF-7	breast:
21	chr1:155245319..155249606-chr1:155290397..155296026,10	K562	blood:
22	chr1:155220177..155222368-chr1:155294459..155296606,2	K562	blood:
23	chr1:155177559..155180202-chr1:155292394..155295375,3	MCF-7	breast:
24	chr1:155292200..155295685-chr1:155531348..155534529,4	MCF-7	breast:
25	chr1:155218380..155222913-chr1:155290636..155299650,10	K562	blood:
26	chr1:155242211..155244809-chr1:155291827..155295187,4	K562	blood:
27	chr1:155293486..155295874-chr17:62223276..62225460,2	MCF-7	breast:
28	chr1:155220830..155222351-chr1:155293620..155295201,2	MCF-7	breast:
29	chr1:155223794..155226979-chr1:155292101..155295505,5	K562	blood:
30	chr1:155193544..155197336-chr1:155293049..155296583,5	MCF-7	breast:
31	chr1:155292471..155294999-chr1:155531525..155533817,3	K562	blood:
32	chr1:155293644..155295180-chr1:155658200..155659752,2	MCF-7	breast:

No data

Variant related genes	Relation type
RUSC1-AS1	TF binding region
RUSC1	TF binding region
ENSG00000177628	Chromatin interaction
ENSG00000163463	Chromatin interaction
ENSG00000160766	Chromatin interaction
ENSG00000143630	Chromatin interaction
ENSG00000173171	Chromatin interaction
ENSG00000176444	Chromatin interaction
ENSG00000163462	Chromatin interaction
ENSG00000143590	Chromatin interaction
ENSG00000116539	Chromatin interaction
ENSG00000132676	Chromatin interaction
ENSG00000266402	Chromatin interaction
ENSG00000185499	Chromatin interaction
ENSG00000235919	Chromatin interaction
ENSG00000271748	Chromatin interaction
ENSG00000160767	Chromatin interaction
ENSG00000163374	Chromatin interaction
ENSG00000116521	Chromatin interaction
ENSG00000169231	Chromatin interaction
ENSG00000199753	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10157264	1.00[AMR][1000 genomes]
rs16836822	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60211142	1.00[AMR][1000 genomes]
rs60455144	1.00[AMR][1000 genomes]
rs60650386	1.00[AMR][1000 genomes]
rs61518562	1.00[AMR][1000 genomes]
rs61732801	1.00[AMR][1000 genomes]
rs7549232	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs8177963	1.00[AMR][1000 genomes]
rs9803672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
2	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
3	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
4	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
5	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
6	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
8	nsv946413	chr1:155286949-155296660	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155290200-155295000	Active TSS	Aorta	Aorta
2	chr1:155290400-155295400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr1:155290600-155295800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr1:155291800-155295200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:155292200-155295200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:155292200-155295200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr1:155292200-155295200	Active TSS	Lung	lung
8	chr1:155292200-155295200	Active TSS	Right Atrium	heart
9	chr1:155292200-155295400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
10	chr1:155292200-155295600	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr1:155292400-155295000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr1:155292400-155295000	Active TSS	Brain Hippocampus Middle	brain
13	chr1:155292400-155295000	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr1:155292400-155295000	Active TSS	Esophagus	oesophagus
15	chr1:155292400-155295000	Active TSS	Psoas Muscle	Psoas
16	chr1:155292400-155295200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:155292400-155295200	Active TSS	Brain Substantia Nigra	brain
18	chr1:155292400-155295200	Active TSS	Colon Smooth Muscle	Colon
19	chr1:155292400-155295200	Active TSS	Left Ventricle	heart
20	chr1:155292400-155295400	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr1:155292400-155295400	Active TSS	Rectal Smooth Muscle	rectum
22	chr1:155292400-155295600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:155292400-155295600	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr1:155292400-155295600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:155292400-155295600	Active TSS	Brain Cingulate Gyrus	brain
26	chr1:155292400-155295600	Active TSS	Fetal Kidney	kidney
27	chr1:155292400-155295800	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr1:155292400-155295800	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr1:155292600-155295000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:155292600-155295000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr1:155292600-155295000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:155292600-155295000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:155292600-155295000	Active TSS	Fetal Stomach	stomach
34	chr1:155292600-155295000	Active TSS	Gastric	stomach
35	chr1:155292600-155295000	Active TSS	HSMM	muscle
36	chr1:155292600-155295200	Active TSS	H1 Cell Line	embryonic stem cell
37	chr1:155292600-155295200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr1:155292600-155295200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:155292600-155295200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:155292600-155295200	Active TSS	Muscle Satellite Cultured Cells	--
41	chr1:155292600-155295200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:155292600-155295200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:155292600-155295200	Active TSS	Fetal Intestine Small	intestine
44	chr1:155292600-155295200	Active TSS	Fetal Lung	lung
45	chr1:155292600-155295200	Active TSS	Ovary	ovary
46	chr1:155292600-155295200	Active TSS	Pancreas	Pancrea
47	chr1:155292600-155295200	Active TSS	Placenta Amnion	Placenta Amnion
48	chr1:155292600-155295200	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr1:155292600-155295200	Active TSS	K562	blood
50	chr1:155292600-155295200	Active TSS	NHEK	skin

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