Variant report

Variant	rs9803672
Chromosome Location	chr1:155301794-155301795
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155295465..155297431-chr1:155299858..155302436,2	K562	blood:
2	chr1:155293557..155296669-chr1:155301653..155305075,3	MCF-7	breast:
3	chr1:155213293..155216018-chr1:155300420..155302258,2	K562	blood:
4	chr1:155300511..155302599-chr1:155303842..155306575,3	K562	blood:
5	chr1:155300511..155303524-chr1:155305047..155307962,3	K562	blood:

Variant related genes	Relation type
ENSG00000160753	Chromatin interaction
ENSG00000177628	Chromatin interaction
ENSG00000225855	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10157264	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836822	1.00[AMR][1000 genomes]
rs35826120	1.00[AMR][1000 genomes]
rs60211142	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60455144	1.00[AMR][1000 genomes]
rs60650386	1.00[AMR][1000 genomes]
rs61518562	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61732801	1.00[AMR][1000 genomes]
rs7549232	1.00[AMR][1000 genomes]
rs8177963	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
2	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
3	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
4	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
5	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
6	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155295000-155307000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:155295000-155307000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:155295200-155306000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr1:155295400-155307400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:155295400-155308600	Weak transcription	Psoas Muscle	Psoas
6	chr1:155295600-155301800	Weak transcription	Right Atrium	heart
7	chr1:155295800-155306600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:155295800-155307200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:155296000-155307200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:155296000-155309000	Weak transcription	Stomach Mucosa	stomach
11	chr1:155296000-155334400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:155296200-155301800	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:155296200-155301800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:155296200-155302600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:155296200-155304600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr1:155296200-155312800	Weak transcription	Fetal Heart	heart
17	chr1:155296200-155349400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:155296400-155304800	Strong transcription	Fetal Intestine Small	intestine
19	chr1:155296600-155304600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:155296600-155348200	Strong transcription	Fetal Stomach	stomach
21	chr1:155296800-155305200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:155296800-155330000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:155297000-155330800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:155297200-155322600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:155297600-155302200	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:155297800-155357400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:155298000-155302000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:155298200-155302200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:155298200-155320800	Strong transcription	Fetal Thymus	thymus
30	chr1:155299400-155305000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr1:155299600-155302200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:155299600-155302600	Strong transcription	Fetal Muscle Leg	muscle
33	chr1:155299600-155330200	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr1:155299600-155341200	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr1:155299600-155353600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr1:155299800-155302000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr1:155299800-155302600	Strong transcription	Osteobl	bone
38	chr1:155300600-155306600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr1:155300800-155304600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:155300800-155304800	Weak transcription	NHDF-Ad	bronchial
41	chr1:155300800-155306800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:155300800-155311600	Weak transcription	Small Intestine	intestine
43	chr1:155301000-155303200	Weak transcription	Primary B cells from cord blood	blood
44	chr1:155301000-155303200	Weak transcription	HepG2	liver
45	chr1:155301000-155304600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:155301000-155304600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:155301000-155304600	Weak transcription	Left Ventricle	heart
48	chr1:155301000-155304600	Weak transcription	HUVEC	blood vessel
49	chr1:155301000-155306800	Weak transcription	Fetal Brain Male	brain
50	chr1:155301000-155307000	Weak transcription	NHEK	skin

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