Variant report

Variant	rs9596842
Chromosome Location	chr13:54280203-54280204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1379827	0.81[EUR][1000 genomes]
rs1458268	0.80[EUR][1000 genomes]
rs6561746	0.91[EUR][1000 genomes]
rs7334923	0.87[EUR][1000 genomes]
rs7983436	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs7995039	0.90[EUR][1000 genomes]
rs9316652	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9316660	0.92[EUR][1000 genomes]
rs9563174	0.92[EUR][1000 genomes]
rs9563182	0.82[EUR][1000 genomes]
rs9563183	0.80[EUR][1000 genomes]
rs9568906	0.92[EUR][1000 genomes]
rs9568907	0.92[EUR][1000 genomes]
rs9568917	0.92[EUR][1000 genomes]
rs9568919	0.92[EUR][1000 genomes]
rs9568920	0.92[EUR][1000 genomes]
rs9568923	0.92[EUR][1000 genomes]
rs9568924	0.91[EUR][1000 genomes]
rs9568935	0.82[EUR][1000 genomes]
rs9591536	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3368231	chr13:54269000-54286267	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54266000-54287200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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