Variant report

Variant	rs9568923
Chromosome Location	chr13:54357573-54357574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1379827	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1379831	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1379832	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1379833	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1458268	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1545659	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1977889	0.81[EUR][1000 genomes]
rs4088520	0.80[EUR][1000 genomes]
rs4884722	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6561746	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7334923	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7336670	0.86[ASN][1000 genomes]
rs7983436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995039	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316652	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9316660	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9536557	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9563174	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563182	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9563183	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568906	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568907	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568917	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568918	0.89[ASN][1000 genomes]
rs9568919	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568920	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568924	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568935	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568943	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568948	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9591536	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596842	0.92[EUR][1000 genomes]
rs9596858	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596862	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv34743	chr13:54313729-54424593	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757532	chr13:54333209-54421334	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759937	chr13:54333209-54421334	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv427931	chr13:54352943-54543848	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv826646	chr13:54355102-54423461	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54356000-54358800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:54356600-54361600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr13:54356800-54357600	Enhancers	Fetal Stomach	stomach
4	chr13:54356800-54357800	Enhancers	Pancreas	Pancrea
5	chr13:54356800-54357800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr13:54356800-54358000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr13:54356800-54358000	Enhancers	Gastric	stomach
8	chr13:54356800-54358000	Enhancers	Psoas Muscle	Psoas
9	chr13:54357000-54357600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr13:54357000-54361200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr13:54357000-54361400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr13:54357200-54357600	Enhancers	Fetal Lung	lung
13	chr13:54357200-54358000	Enhancers	Brain Angular Gyrus	brain
14	chr13:54357200-54358000	Enhancers	Brain Germinal Matrix	brain
15	chr13:54357200-54358000	Enhancers	Brain Hippocampus Middle	brain
16	chr13:54357200-54358200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:54357200-54358200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:54357200-54358400	Enhancers	Fetal Brain Male	brain
19	chr13:54357200-54358400	Enhancers	Fetal Brain Female	brain
20	chr13:54357200-54358600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr13:54357200-54361400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr13:54357200-54361600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr13:54357400-54357800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr13:54357400-54362000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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