Variant report

Variant	rs1379831
Chromosome Location	chr13:54418506-54418507
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OLFM4-3	chr13:54418480-54418657	ENSG00000261517.1

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1379827	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1379832	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379833	0.97[EUR][1000 genomes]
rs1458268	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545659	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971924	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1977889	0.97[EUR][1000 genomes]
rs1977890	0.93[EUR][1000 genomes]
rs4088520	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4884722	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6561746	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7334923	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7983436	0.89[CEU][hapmap];0.92[CHB][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7995039	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9316660	0.82[EUR][1000 genomes]
rs9536557	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563174	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9563182	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9563183	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568906	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568907	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568917	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568919	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568920	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568923	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568924	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9568935	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9568943	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568948	0.98[EUR][1000 genomes]
rs9591536	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9596858	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596862	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044137	chr13:54124103-54521120	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv541777	chr13:54124103-54521120	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv34743	chr13:54313729-54424593	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757532	chr13:54333209-54421334	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759937	chr13:54333209-54421334	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv427931	chr13:54352943-54543848	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv826646	chr13:54355102-54423461	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv900092	chr13:54362624-54419426	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv519254	chr13:54414564-54442809	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv900093	chr13:54414564-54594292	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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