Variant report

Variant	rs9601214
Chromosome Location	chr13:79894229-79894230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7321619	1.00[AMR][1000 genomes]
rs7998502	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8002645	1.00[AMR][1000 genomes]
rs9318622	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9601209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9601221	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9601224	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976249	chr13:79888890-79898094	Strong transcription Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79882200-79894400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:79882200-79894400	Weak transcription	Brain Angular Gyrus	brain
3	chr13:79882200-79895600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr13:79882200-79899200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:79882200-79907400	Weak transcription	Fetal Muscle Leg	muscle
6	chr13:79882200-79907600	Weak transcription	Brain Anterior Caudate	brain
7	chr13:79882200-79909800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:79882400-79894400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr13:79882400-79894400	Weak transcription	Osteobl	bone
10	chr13:79882400-79904400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr13:79882400-79905000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr13:79882400-79911200	Weak transcription	Left Ventricle	heart
13	chr13:79882400-79911200	Weak transcription	Ovary	ovary
14	chr13:79882400-79914400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr13:79882400-79925000	Weak transcription	HSMMtube	muscle
16	chr13:79882600-79894400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr13:79884000-79899400	Weak transcription	Psoas Muscle	Psoas
18	chr13:79884000-79905200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:79884400-79909000	Weak transcription	Brain Hippocampus Middle	brain
20	chr13:79884800-79895600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:79886400-79911200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:79886600-79900000	Weak transcription	Fetal Kidney	kidney
23	chr13:79886600-79950200	Weak transcription	Fetal Brain Male	brain
24	chr13:79887000-79894600	Weak transcription	Fetal Lung	lung
25	chr13:79887000-79904600	Weak transcription	Brain Substantia Nigra	brain
26	chr13:79887000-79907800	Weak transcription	Colon Smooth Muscle	Colon
27	chr13:79887200-79946600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr13:79887800-79907800	Weak transcription	NHLF	lung
29	chr13:79888000-79894400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr13:79888000-79942800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:79888200-79947000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr13:79888400-79900000	Weak transcription	A549	lung
33	chr13:79888400-79947000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr13:79888600-79897400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr13:79889400-79894400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr13:79889400-79896200	Weak transcription	Hela-S3	cervix
37	chr13:79889400-79905000	Weak transcription	Fetal Intestine Small	intestine
38	chr13:79889400-79909800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr13:79889600-79907800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr13:79889800-79899400	Weak transcription	K562	blood
41	chr13:79889800-79909800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr13:79889800-79916200	Weak transcription	Fetal Heart	heart
43	chr13:79890400-79905000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr13:79890600-79894600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr13:79890800-79895400	Weak transcription	Fetal Brain Female	brain
46	chr13:79890800-79896600	Strong transcription	HMEC	breast
47	chr13:79891000-79896600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr13:79891200-79895800	Strong transcription	GM12878-XiMat	blood
49	chr13:79891200-79896000	Strong transcription	Primary B cells from cord blood	blood
50	chr13:79891200-79897000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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