Variant report

Variant	rs9601224
Chromosome Location	chr13:79956691-79956692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:79955549..79959842-chr13:79960157..79964525,5	K562	blood:
2	chr13:79955154..79956833-chr13:79959758..79961618,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252496	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs7321619	1.00[AMR][1000 genomes]
rs7998502	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs8002645	1.00[AMR][1000 genomes]
rs9318622	1.00[AMR][1000 genomes]
rs9601209	1.00[AMR][1000 genomes]
rs9601214	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9601221	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900586	chr13:79892722-79968467	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv900587	chr13:79894736-79956691	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv832657	chr13:79904978-80099108	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:79893200-79957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:79942000-79967400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:79943000-79957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:79946000-79960000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:79946400-79969200	Weak transcription	Fetal Kidney	kidney
6	chr13:79951200-79959800	Weak transcription	Fetal Heart	heart
7	chr13:79951200-79962200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:79951200-79979200	Weak transcription	Esophagus	oesophagus
9	chr13:79951400-79956800	Weak transcription	A549	lung
10	chr13:79951400-79957200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:79951400-79959600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr13:79951400-79960000	Weak transcription	NHDF-Ad	bronchial
13	chr13:79951400-79962200	Weak transcription	Lung	lung
14	chr13:79951600-79956800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr13:79951600-79960000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:79951600-79960000	Weak transcription	NH-A	brain
17	chr13:79951600-79965400	Weak transcription	Brain Angular Gyrus	brain
18	chr13:79951600-79969000	Weak transcription	Fetal Brain Male	brain
19	chr13:79951800-79960000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr13:79951800-79961800	Weak transcription	Brain Germinal Matrix	brain
21	chr13:79951800-79978200	Weak transcription	Aorta	Aorta
22	chr13:79952000-79967200	Weak transcription	Brain Hippocampus Middle	brain
23	chr13:79952000-79967600	Weak transcription	Gastric	stomach
24	chr13:79952200-79956800	Weak transcription	Stomach Mucosa	stomach
25	chr13:79952200-79960000	Weak transcription	Ovary	ovary
26	chr13:79952200-79967600	Weak transcription	Pancreas	Pancrea
27	chr13:79952200-79967600	Weak transcription	Spleen	Spleen
28	chr13:79952400-79956800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr13:79952400-79956800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr13:79952400-79956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr13:79952400-79957600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr13:79952400-79958000	Weak transcription	HepG2	liver
33	chr13:79952400-79960000	Weak transcription	NHLF	lung
34	chr13:79952400-79960000	Weak transcription	Osteobl	bone
35	chr13:79952400-79962200	Weak transcription	Psoas Muscle	Psoas
36	chr13:79952400-79963000	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr13:79952400-79963600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr13:79952400-79966800	Weak transcription	Thymus	Thymus
39	chr13:79952400-79967000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr13:79952400-79967200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr13:79952400-79967200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr13:79952400-79967200	Weak transcription	Fetal Lung	lung
43	chr13:79952400-79967400	Weak transcription	Fetal Brain Female	brain
44	chr13:79952400-79967600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr13:79952400-79967600	Weak transcription	Left Ventricle	heart
46	chr13:79952400-79967600	Weak transcription	Right Ventricle	heart
47	chr13:79952400-79967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr13:79952600-79956800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr13:79952600-79957000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr13:79952600-79957400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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