Variant report

Variant	rs9619131
Chromosome Location	chr22:31115442-31115443
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11089471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs136369	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs136370	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4820896	1.00[ASN][1000 genomes]
rs5997740	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31112600-31117000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr22:31112800-31115600	Enhancers	Brain Hippocampus Middle	brain
3	chr22:31113800-31132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr22:31114000-31140600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr22:31114200-31115800	Weak transcription	Spleen	Spleen
6	chr22:31114200-31116000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr22:31114200-31118000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr22:31114200-31123000	Weak transcription	HUVEC	blood vessel
9	chr22:31114400-31116400	Weak transcription	Brain Angular Gyrus	brain
10	chr22:31114800-31116400	Enhancers	Brain Substantia Nigra	brain
11	chr22:31114800-31118200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr22:31115000-31115800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr22:31115000-31116000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr22:31115200-31128800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr22:31115400-31116200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr22:31115400-31116400	Weak transcription	Brain Anterior Caudate	brain
17	chr22:31115400-31117200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr22:31115400-31126400	Weak transcription	HSMM	muscle
19	chr22:31115400-31128800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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