Variant report

Variant	rs11089471
Chromosome Location	chr22:31113828-31113829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31108562..31111393-chr22:31113342..31115524,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs136369	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs136370	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4820896	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5997740	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609079	0.82[AFR][1000 genomes]
rs9619131	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621073	1.00[YRI][hapmap];0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31112600-31114600	Enhancers	HMEC	breast
2	chr22:31112600-31117000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr22:31112800-31114200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr22:31112800-31114200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr22:31112800-31114200	Enhancers	Brain Anterior Caudate	brain
6	chr22:31112800-31114200	Enhancers	HUVEC	blood vessel
7	chr22:31112800-31114200	Enhancers	NHEK	skin
8	chr22:31112800-31114400	Enhancers	HSMMtube	muscle
9	chr22:31112800-31114400	Enhancers	NH-A	brain
10	chr22:31112800-31114600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr22:31112800-31114600	Enhancers	Osteobl	bone
12	chr22:31112800-31114800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr22:31112800-31114800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr22:31112800-31115200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr22:31112800-31115400	Enhancers	HSMM	muscle
16	chr22:31112800-31115600	Enhancers	Brain Hippocampus Middle	brain
17	chr22:31113000-31114400	Enhancers	Brain Substantia Nigra	brain
18	chr22:31113200-31114400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr22:31113200-31114400	Enhancers	Brain Angular Gyrus	brain
20	chr22:31113200-31114400	Enhancers	NHLF	lung
21	chr22:31113200-31115200	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr22:31113200-31115400	Enhancers	Brain Cingulate Gyrus	brain
23	chr22:31113200-31115400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr22:31113400-31114000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr22:31113400-31114000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr22:31113400-31114200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr22:31113400-31114200	Enhancers	Placenta Amnion	Placenta Amnion
28	chr22:31113400-31114200	Enhancers	A549	lung
29	chr22:31113400-31114600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr22:31113600-31114000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr22:31113600-31114200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr22:31113600-31114200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr22:31113600-31114200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr22:31113600-31114200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr22:31113800-31114000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr22:31113800-31114200	Enhancers	Spleen	Spleen
37	chr22:31113800-31114200	Flanking Active TSS	NHDF-Ad	bronchial
38	chr22:31113800-31132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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