Variant report

Variant	rs9619316
Chromosome Location	chr22:33288694-33288695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12167310	0.86[YRI][hapmap]
rs12169377	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998650	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998651	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998653	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621578	0.85[YRI][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33282200-33289400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33283000-33289200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33283600-33299600	Weak transcription	Right Atrium	heart
5	chr22:33286600-33289000	Enhancers	Fetal Heart	heart
6	chr22:33287600-33289200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr22:33287800-33309600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr22:33287800-33312000	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links