Variant report

Variant	rs5998653
Chromosome Location	chr22:33305937-33305938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33300798..33303158-chr22:33303918..33306579,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1005664	1.00[CEU][hapmap]
rs10222253	1.00[CEU][hapmap]
rs11089597	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs11089602	1.00[CEU][hapmap]
rs1119511	1.00[CEU][hapmap]
rs1119512	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs12167310	1.00[CEU][hapmap]
rs12168142	1.00[CEU][hapmap]
rs12169377	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs137501	0.81[YRI][hapmap];0.81[AFR][1000 genomes]
rs16991203	1.00[CEU][hapmap]
rs16991580	1.00[CEU][hapmap]
rs1894457	1.00[CEU][hapmap]
rs5754327	1.00[CEU][hapmap]
rs5998650	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998651	1.00[CEU][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998658	1.00[CEU][hapmap]
rs7285055	1.00[CEU][hapmap]
rs8140502	1.00[CEU][hapmap]
rs9619309	1.00[CEU][hapmap]
rs9619310	1.00[CEU][hapmap]
rs9619316	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619322	1.00[CEU][hapmap]
rs9619323	1.00[CEU][hapmap]
rs9621566	1.00[CEU][hapmap]
rs9621578	1.00[CEU][hapmap]
rs9621599	1.00[CEU][hapmap]
rs9621600	1.00[CEU][hapmap]
rs9621606	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs9621608	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs9621609	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs9621610	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs9621615	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs9621622	1.00[CEU][hapmap]
rs9621627	1.00[CEU][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33287800-33309600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:33287800-33312000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr22:33290000-33312000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33298000-33306800	Weak transcription	K562	blood
5	chr22:33300000-33307000	Weak transcription	Brain Substantia Nigra	brain
6	chr22:33302000-33306000	Weak transcription	Brain Angular Gyrus	brain
7	chr22:33302400-33307200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:33304600-33308000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr22:33304800-33306000	Enhancers	Fetal Brain Male	brain
10	chr22:33305000-33306200	Enhancers	Aorta	Aorta
11	chr22:33305000-33307800	Enhancers	Colon Smooth Muscle	Colon
12	chr22:33305000-33308200	Enhancers	Fetal Lung	lung
13	chr22:33305000-33308200	Enhancers	Fetal Stomach	stomach
14	chr22:33305200-33307600	Enhancers	Rectal Smooth Muscle	rectum
15	chr22:33305600-33306200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr22:33305600-33307800	Enhancers	Brain Hippocampus Middle	brain
17	chr22:33305600-33308000	Enhancers	Fetal Brain Female	brain
18	chr22:33305600-33308000	Enhancers	Ovary	ovary
19	chr22:33305800-33306000	Enhancers	Brain Cingulate Gyrus	brain
20	chr22:33305800-33306000	Enhancers	Brain Germinal Matrix	brain
21	chr22:33305800-33306000	Enhancers	Fetal Muscle Trunk	muscle
22	chr22:33305800-33306200	Enhancers	Brain Anterior Caudate	brain
23	chr22:33305800-33306600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr22:33305800-33306600	Enhancers	Fetal Muscle Leg	muscle
25	chr22:33305800-33306600	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr22:33305800-33307000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr22:33305800-33307600	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr22:33305800-33308000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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