Variant report

Variant	rs9621610
Chromosome Location	chr22:33363091-33363092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1005664	1.00[CEU][hapmap]
rs10222206	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10222241	0.82[AFR][1000 genomes]
rs10222253	1.00[CEU][hapmap]
rs11089596	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11089597	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11089602	1.00[CEU][hapmap]
rs1119511	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1119512	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12166853	0.84[AFR][1000 genomes]
rs12167310	1.00[CEU][hapmap]
rs12168142	1.00[CEU][hapmap]
rs12329983	0.83[AMR][1000 genomes]
rs12373961	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16991203	1.00[CEU][hapmap]
rs16991580	1.00[CEU][hapmap]
rs16991605	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1894457	1.00[CEU][hapmap]
rs1988647	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56076355	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56095662	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5754327	1.00[CEU][hapmap]
rs5998651	1.00[CEU][hapmap]
rs5998653	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs5998658	1.00[CEU][hapmap]
rs695224	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7285055	1.00[CEU][hapmap]
rs7364251	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7364286	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8140502	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619309	1.00[CEU][hapmap]
rs9619310	1.00[CEU][hapmap]
rs9619319	0.91[AFR][1000 genomes]
rs9619320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619322	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619323	1.00[CEU][hapmap]
rs9621566	1.00[CEU][hapmap]
rs9621578	1.00[CEU][hapmap]
rs9621599	1.00[CEU][hapmap]
rs9621600	1.00[CEU][hapmap]
rs9621606	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621607	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621608	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621609	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9621613	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs9621614	0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621615	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621619	0.83[AMR][1000 genomes]
rs9621622	1.00[CEU][hapmap]
rs9621627	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:33354000-33363400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr22:33354000-33374000	Weak transcription	Brain Angular Gyrus	brain
6	chr22:33354400-33363800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr22:33354400-33381800	Weak transcription	Fetal Brain Male	brain
8	chr22:33354600-33387400	Weak transcription	Fetal Brain Female	brain
9	chr22:33354800-33363200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr22:33355000-33363600	Weak transcription	Right Atrium	heart
11	chr22:33359800-33363600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr22:33360000-33363200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr22:33360000-33363600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr22:33361000-33363400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr22:33361000-33363400	Weak transcription	Fetal Heart	heart
16	chr22:33361000-33371400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr22:33361000-33380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr22:33361200-33363400	Weak transcription	Colon Smooth Muscle	Colon
19	chr22:33361200-33363800	Weak transcription	Left Ventricle	heart
20	chr22:33361200-33368400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr22:33361600-33363600	Weak transcription	Brain Hippocampus Middle	brain
22	chr22:33362000-33363200	Enhancers	HepG2	liver
23	chr22:33362200-33364400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr22:33362200-33365800	Enhancers	Duodenum Mucosa	Duodenum
25	chr22:33362200-33365800	Enhancers	Fetal Intestine Small	intestine
26	chr22:33362200-33366400	Enhancers	Fetal Intestine Large	intestine
27	chr22:33362400-33363800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr22:33362400-33365800	Enhancers	Liver	Liver
29	chr22:33362600-33363800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr22:33362800-33364600	Enhancers	Fetal Kidney	kidney
31	chr22:33363000-33363200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr22:33363000-33363200	Enhancers	Lung	lung
33	chr22:33363000-33363400	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr22:33363000-33363800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr22:33363000-33364000	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr22:33363000-33364200	Enhancers	Rectal Smooth Muscle	rectum
37	chr22:33363000-33364400	Enhancers	Fetal Lung	lung
38	chr22:33363000-33364800	Enhancers	Fetal Stomach	stomach

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