Variant report

Variant	rs9619320
Chromosome Location	chr22:33375109-33375110
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32292186-32294405..22:33368625-33375969	K562	blood:
2	22:32868055-32872511..22:33368625-33375969	K562	blood:
3	22:32053085-32061138..22:33368625-33375969	Hela-S3	cervix:
4	22:32920308-32927723..22:33368625-33375969	H1-hESC	embryonic stem cell:	embryo
5	22:32594665-32606395..22:33368625-33375969	K562	blood:

Variant related genes	Relation type
ENSG00000254127	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000242082	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000128253	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000241878	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10222206	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10222241	0.82[AFR][1000 genomes]
rs11089596	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11089597	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1119511	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1119512	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12166853	0.84[AFR][1000 genomes]
rs12329983	0.83[AMR][1000 genomes]
rs12373961	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16991605	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1988647	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56076355	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56095662	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs695224	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7364251	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7364286	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8140502	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619319	0.91[AFR][1000 genomes]
rs9619322	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621606	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621607	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621608	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621609	0.94[AFR][1000 genomes]
rs9621610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621613	0.85[AFR][1000 genomes]
rs9621614	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621615	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621619	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:33354400-33381800	Weak transcription	Fetal Brain Male	brain
4	chr22:33354600-33387400	Weak transcription	Fetal Brain Female	brain
5	chr22:33361000-33380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:33368800-33381800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr22:33369000-33376800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr22:33371400-33375400	Weak transcription	HepG2	liver
9	chr22:33372000-33376400	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr22:33372000-33376800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr22:33373000-33375800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr22:33373800-33376200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr22:33374000-33376000	Enhancers	Placenta Amnion	Placenta Amnion
14	chr22:33374000-33381800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr22:33374200-33376200	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr22:33374400-33376800	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr22:33374400-33380400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr22:33374600-33381800	Weak transcription	Brain Angular Gyrus	brain
19	chr22:33374800-33381200	Weak transcription	Lung	lung

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