Variant report

Variant	rs9621606
Chromosome Location	chr22:33343242-33343243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32846948-32860159..22:33339333-33353583	K562	blood:

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1005664	1.00[CEU][hapmap]
rs10222206	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10222253	1.00[CEU][hapmap]
rs10222305	0.83[AFR][1000 genomes]
rs11089596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11089597	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11089602	1.00[CEU][hapmap]
rs1119511	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1119512	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11912124	1.00[EUR][1000 genomes]
rs11914041	1.00[EUR][1000 genomes]
rs12167310	1.00[CEU][hapmap]
rs12168142	1.00[CEU][hapmap]
rs12373961	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1365835	0.81[AFR][1000 genomes]
rs16991203	1.00[CEU][hapmap]
rs16991580	1.00[CEU][hapmap]
rs16991605	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1894457	1.00[CEU][hapmap]
rs1988647	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56076355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56095662	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs5754327	1.00[CEU][hapmap]
rs5998651	1.00[CEU][hapmap]
rs5998653	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs5998658	1.00[CEU][hapmap]
rs695224	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7285055	1.00[CEU][hapmap]
rs7364251	1.00[EUR][1000 genomes]
rs7364286	1.00[EUR][1000 genomes]
rs8140502	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9619309	1.00[CEU][hapmap]
rs9619310	1.00[CEU][hapmap]
rs9619319	0.97[AFR][1000 genomes]
rs9619320	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9619322	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9619323	1.00[CEU][hapmap]
rs9621566	1.00[CEU][hapmap]
rs9621578	1.00[CEU][hapmap]
rs9621599	1.00[CEU][hapmap]
rs9621600	1.00[CEU][hapmap]
rs9621607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621608	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621609	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621610	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621613	0.94[YRI][hapmap]
rs9621614	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs9621615	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621622	1.00[CEU][hapmap]
rs9621627	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33338000-33345200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr22:33340200-33346000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33341600-33349600	Weak transcription	Fetal Brain Male	brain
5	chr22:33342800-33344000	Enhancers	Fetal Heart	heart
6	chr22:33343000-33343600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr22:33343000-33344200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr22:33343000-33344400	Enhancers	Duodenum Mucosa	Duodenum
9	chr22:33343000-33345600	Weak transcription	Fetal Kidney	kidney
10	chr22:33343000-33347000	Enhancers	Fetal Intestine Small	intestine
11	chr22:33343200-33345000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr22:33343200-33345800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr22:33343200-33347400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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