Variant report

Variant	rs9619309
Chromosome Location	chr22:33177496-33177497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32477762-32487457..22:33177374-33178968	GM12878	blood:
2	22:32920308-32927723..22:33177374-33178968	H1-hESC	embryonic stem cell:	embryo
3	22:31836635-31847259..22:33177374-33178968	Hela-S3	cervix:
4	22:32868055-32872511..22:33177374-33178968	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000184708	Chromatin interaction
ENSG00000100170	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000100225	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1005662	1.00[EUR][1000 genomes]
rs1005663	1.00[EUR][1000 genomes]
rs1005664	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10222253	1.00[CEU][hapmap]
rs11089597	1.00[CEU][hapmap]
rs1119511	1.00[CEU][hapmap]
rs1119512	1.00[CEU][hapmap]
rs11912124	1.00[AMR][1000 genomes]
rs11914041	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12160339	1.00[CEU][hapmap]
rs12167310	1.00[CEU][hapmap]
rs12170307	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs130534	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13340090	1.00[CEU][hapmap]
rs1365835	1.00[EUR][1000 genomes]
rs16985304	1.00[CEU][hapmap]
rs16991203	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16991580	1.00[CEU][hapmap]
rs1894457	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5754327	1.00[CEU][hapmap]
rs5998549	1.00[CEU][hapmap]
rs5998651	1.00[CEU][hapmap]
rs5998653	1.00[CEU][hapmap]
rs5998658	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7511209	1.00[CEU][hapmap]
rs8140502	1.00[CEU][hapmap]
rs9619310	1.00[CEU][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621551	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621566	1.00[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621570	0.84[AFR][1000 genomes]
rs9621578	1.00[CEU][hapmap]
rs9621599	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9621600	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9621606	1.00[CEU][hapmap]
rs9621608	1.00[CEU][hapmap]
rs9621609	1.00[CEU][hapmap]
rs9621610	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061384	chr22:33165464-33191811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33173400-33179000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr22:33174200-33184600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr22:33175000-33177800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr22:33175600-33177600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr22:33175600-33177600	Enhancers	Placenta	Placenta
6	chr22:33176000-33178000	Enhancers	Adipose Nuclei	Adipose
7	chr22:33176400-33181600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr22:33176600-33181400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr22:33176600-33184800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr22:33176800-33181800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr22:33176800-33182800	Enhancers	HepG2	liver
12	chr22:33176800-33185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr22:33176800-33191200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr22:33176800-33196600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr22:33177400-33177600	Enhancers	Right Atrium	heart
16	chr22:33177400-33178200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr22:33177400-33178600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr22:33177400-33179600	Weak transcription	Liver	Liver
19	chr22:33177400-33192800	Weak transcription	Pancreas	Pancrea

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