Variant report

Variant	rs16991203
Chromosome Location	chr22:33180850-33180851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32920308-32927723..22:33178968-33185617	Hela-S3	cervix:
2	22:32170492-32188129..22:33178968-33185617	Hela-S3	cervix:
3	22:32868055-32872511..22:33178968-33185617	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1005662	1.00[EUR][1000 genomes]
rs1005663	1.00[EUR][1000 genomes]
rs1005664	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10222253	1.00[CEU][hapmap]
rs11089597	1.00[CEU][hapmap]
rs1119511	1.00[CEU][hapmap]
rs1119512	1.00[CEU][hapmap]
rs11912124	1.00[AMR][1000 genomes]
rs11914041	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12160339	1.00[CEU][hapmap]
rs12167310	1.00[CEU][hapmap]
rs12170307	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs130534	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13340090	1.00[CEU][hapmap]
rs1365835	1.00[EUR][1000 genomes]
rs16985304	1.00[CEU][hapmap]
rs16991580	1.00[CEU][hapmap]
rs1894457	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5754327	1.00[CEU][hapmap]
rs5998549	1.00[CEU][hapmap]
rs5998651	1.00[CEU][hapmap]
rs5998653	1.00[CEU][hapmap]
rs5998658	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7511209	1.00[CEU][hapmap]
rs8140502	1.00[CEU][hapmap]
rs9619309	1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9619310	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621551	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621566	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621570	0.84[AFR][1000 genomes]
rs9621578	1.00[CEU][hapmap]
rs9621599	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9621600	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9621606	1.00[CEU][hapmap]
rs9621608	1.00[CEU][hapmap]
rs9621609	1.00[CEU][hapmap]
rs9621610	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061384	chr22:33165464-33191811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33174200-33184600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr22:33176400-33181600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr22:33176600-33181400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:33176600-33184800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:33176800-33181800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr22:33176800-33182800	Enhancers	HepG2	liver
7	chr22:33176800-33185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr22:33176800-33191200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr22:33176800-33196600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr22:33177400-33192800	Weak transcription	Pancreas	Pancrea
11	chr22:33177600-33184600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr22:33178000-33181400	Weak transcription	Adipose Nuclei	Adipose
13	chr22:33179800-33186200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr22:33180000-33181800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr22:33180600-33181400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr22:33180600-33184800	Weak transcription	Lung	lung
17	chr22:33180800-33182000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr22:33180800-33182200	Enhancers	Placenta	Placenta
19	chr22:33180800-33182400	Enhancers	Fetal Stomach	stomach

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