Variant report

Variant	rs16991580
Chromosome Location	chr22:33337143-33337144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1005664	1.00[CEU][hapmap]
rs10222253	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10222305	0.93[AFR][1000 genomes]
rs11089597	1.00[CEU][hapmap]
rs11089602	1.00[CEU][hapmap]
rs1119511	1.00[CEU][hapmap]
rs1119512	1.00[CEU][hapmap]
rs11913247	1.00[EUR][1000 genomes]
rs12165603	1.00[EUR][1000 genomes]
rs12166563	1.00[EUR][1000 genomes]
rs12167310	1.00[CEU][hapmap]
rs12168142	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12169569	1.00[EUR][1000 genomes]
rs12329983	1.00[EUR][1000 genomes]
rs133932	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs16991203	1.00[CEU][hapmap]
rs1894457	1.00[CEU][hapmap];0.84[MKK][hapmap]
rs5754327	1.00[CEU][hapmap]
rs58499026	1.00[EUR][1000 genomes]
rs59142382	1.00[EUR][1000 genomes]
rs5998651	1.00[CEU][hapmap]
rs5998653	1.00[CEU][hapmap]
rs5998658	1.00[CEU][hapmap]
rs7285055	1.00[CEU][hapmap]
rs7287344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8140502	1.00[CEU][hapmap]
rs9619309	1.00[CEU][hapmap]
rs9619310	1.00[CEU][hapmap];0.84[MKK][hapmap]
rs9619322	1.00[CEU][hapmap]
rs9619323	1.00[CEU][hapmap];0.88[AFR][1000 genomes]
rs9621566	1.00[CEU][hapmap]
rs9621578	1.00[CEU][hapmap]
rs9621599	1.00[CEU][hapmap]
rs9621600	1.00[CEU][hapmap]
rs9621606	1.00[CEU][hapmap]
rs9621608	1.00[CEU][hapmap]
rs9621609	1.00[CEU][hapmap]
rs9621610	1.00[CEU][hapmap]
rs9621615	1.00[CEU][hapmap]
rs9621619	1.00[EUR][1000 genomes]
rs9621621	1.00[EUR][1000 genomes]
rs9621622	1.00[CEU][hapmap]
rs9621627	1.00[CEU][hapmap]
rs9621628	1.00[EUR][1000 genomes]
rs9621640	1.00[EUR][1000 genomes]
rs9621642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33331400-33342800	Weak transcription	Fetal Heart	heart
3	chr22:33335000-33337400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33336400-33337400	Enhancers	Liver	Liver
5	chr22:33336600-33337400	Enhancers	HepG2	liver

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