Variant report

Variant	rs12166563
Chromosome Location	chr22:33510303-33510304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1005664	1.00[CEU][hapmap]
rs10222253	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11089597	1.00[CEU][hapmap]
rs11089602	1.00[CEU][hapmap]
rs1119511	1.00[CEU][hapmap]
rs1119512	1.00[CEU][hapmap]
rs11913122	1.00[EUR][1000 genomes]
rs11913247	1.00[EUR][1000 genomes]
rs11913962	1.00[EUR][1000 genomes]
rs11914009	1.00[EUR][1000 genomes]
rs12158409	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12158415	1.00[EUR][1000 genomes]
rs12159214	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12168142	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12329983	1.00[EUR][1000 genomes]
rs16991580	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16991916	1.00[EUR][1000 genomes]
rs16991969	1.00[EUR][1000 genomes]
rs16992012	1.00[EUR][1000 genomes]
rs2413177	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56660136	1.00[EUR][1000 genomes]
rs56784849	1.00[EUR][1000 genomes]
rs57743865	1.00[EUR][1000 genomes]
rs58499026	1.00[EUR][1000 genomes]
rs58653235	1.00[EUR][1000 genomes]
rs59142382	1.00[EUR][1000 genomes]
rs59845765	1.00[EUR][1000 genomes]
rs5994713	1.00[CEU][hapmap]
rs5994714	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998658	1.00[CEU][hapmap]
rs5998836	1.00[CEU][hapmap]
rs5998838	1.00[EUR][1000 genomes]
rs5998840	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998841	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998848	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998849	1.00[CEU][hapmap]
rs5998853	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998854	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998856	1.00[EUR][1000 genomes]
rs5998857	1.00[EUR][1000 genomes]
rs60578463	1.00[EUR][1000 genomes]
rs6518814	1.00[EUR][1000 genomes]
rs7285055	1.00[CEU][hapmap]
rs7287344	1.00[EUR][1000 genomes]
rs73885004	1.00[EUR][1000 genomes]
rs741979	1.00[EUR][1000 genomes]
rs743792	1.00[EUR][1000 genomes]
rs750515	1.00[CEU][hapmap]
rs8140502	1.00[CEU][hapmap]
rs9619322	1.00[CEU][hapmap]
rs9619323	1.00[CEU][hapmap]
rs9621599	1.00[CEU][hapmap]
rs9621600	1.00[CEU][hapmap]
rs9621606	1.00[CEU][hapmap]
rs9621608	1.00[CEU][hapmap]
rs9621609	1.00[CEU][hapmap]
rs9621610	1.00[CEU][hapmap]
rs9621615	1.00[CEU][hapmap]
rs9621619	1.00[EUR][1000 genomes]
rs9621621	1.00[EUR][1000 genomes]
rs9621622	1.00[CEU][hapmap]
rs9621627	1.00[CEU][hapmap]
rs9621628	1.00[EUR][1000 genomes]
rs9621640	1.00[EUR][1000 genomes]
rs9621642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33507600-33512800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr22:33508200-33510400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr22:33509000-33510600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr22:33509000-33513000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr22:33509200-33512600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr22:33509600-33512800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr22:33509800-33512600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr22:33510200-33511000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr22:33510200-33511200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr22:33510200-33511400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr22:33510200-33511400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr22:33510200-33511400	Enhancers	NHEK	skin

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