Variant report

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10222253	1.00[EUR][1000 genomes]
rs11913122	1.00[EUR][1000 genomes]
rs11913247	1.00[EUR][1000 genomes]
rs11913962	1.00[EUR][1000 genomes]
rs11914009	1.00[EUR][1000 genomes]
rs12158409	1.00[EUR][1000 genomes]
rs12158415	1.00[EUR][1000 genomes]
rs12159214	1.00[EUR][1000 genomes]
rs12166563	1.00[EUR][1000 genomes]
rs12168142	1.00[EUR][1000 genomes]
rs12329983	1.00[EUR][1000 genomes]
rs16991580	1.00[EUR][1000 genomes]
rs16991916	1.00[EUR][1000 genomes]
rs16991969	1.00[EUR][1000 genomes]
rs16992012	1.00[EUR][1000 genomes]
rs2413177	1.00[EUR][1000 genomes]
rs56660136	1.00[EUR][1000 genomes]
rs56784849	1.00[EUR][1000 genomes]
rs57743865	1.00[EUR][1000 genomes]
rs58499026	1.00[EUR][1000 genomes]
rs58653235	1.00[EUR][1000 genomes]
rs59142382	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59845765	1.00[EUR][1000 genomes]
rs5994714	1.00[EUR][1000 genomes]
rs5998838	1.00[EUR][1000 genomes]
rs5998840	1.00[EUR][1000 genomes]
rs5998841	1.00[EUR][1000 genomes]
rs5998848	1.00[EUR][1000 genomes]
rs5998853	1.00[EUR][1000 genomes]
rs5998854	1.00[EUR][1000 genomes]
rs5998856	1.00[EUR][1000 genomes]
rs5998857	1.00[EUR][1000 genomes]
rs60578463	1.00[EUR][1000 genomes]
rs6518814	1.00[EUR][1000 genomes]
rs7287344	1.00[EUR][1000 genomes]
rs73885004	1.00[EUR][1000 genomes]
rs741979	1.00[EUR][1000 genomes]
rs743792	1.00[EUR][1000 genomes]
rs9621619	1.00[EUR][1000 genomes]
rs9621621	1.00[EUR][1000 genomes]
rs9621628	1.00[EUR][1000 genomes]
rs9621640	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33502000-33504000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr22:33502000-33504200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr22:33502000-33504200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr22:33502000-33505400	Weak transcription	NHDF-Ad	bronchial
5	chr22:33502000-33505800	Weak transcription	Fetal Brain Female	brain
6	chr22:33502000-33506800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr22:33502200-33504200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr22:33502200-33504200	Weak transcription	NHEK	skin
9	chr22:33502400-33504200	Weak transcription	HMEC	breast

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