Variant report

Variant	rs12168142
Chromosome Location	chr22:33438967-33438968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000128253	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000128276	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000271093	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000100234	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1005664	1.00[CEU][hapmap]
rs10222253	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11089597	1.00[CEU][hapmap]
rs11089602	1.00[CEU][hapmap]
rs1119511	1.00[CEU][hapmap]
rs1119512	1.00[CEU][hapmap]
rs11913122	1.00[EUR][1000 genomes]
rs11913247	1.00[EUR][1000 genomes]
rs11913962	1.00[EUR][1000 genomes]
rs11914009	1.00[EUR][1000 genomes]
rs12165603	1.00[EUR][1000 genomes]
rs12166563	1.00[EUR][1000 genomes]
rs12167310	1.00[CEU][hapmap]
rs12329983	1.00[EUR][1000 genomes]
rs16991580	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16991916	1.00[EUR][1000 genomes]
rs16991969	1.00[EUR][1000 genomes]
rs5754327	1.00[CEU][hapmap]
rs58499026	1.00[EUR][1000 genomes]
rs59142382	1.00[EUR][1000 genomes]
rs59845765	1.00[EUR][1000 genomes]
rs5998651	1.00[CEU][hapmap]
rs5998653	1.00[CEU][hapmap]
rs5998658	1.00[CEU][hapmap]
rs7285055	1.00[CEU][hapmap]
rs7287344	1.00[EUR][1000 genomes]
rs73885004	1.00[EUR][1000 genomes]
rs743792	1.00[EUR][1000 genomes]
rs8140502	1.00[CEU][hapmap]
rs9619322	1.00[CEU][hapmap]
rs9619323	1.00[CEU][hapmap]
rs9621578	1.00[CEU][hapmap]
rs9621599	1.00[CEU][hapmap]
rs9621600	1.00[CEU][hapmap]
rs9621606	1.00[CEU][hapmap]
rs9621608	1.00[CEU][hapmap]
rs9621609	1.00[CEU][hapmap]
rs9621610	1.00[CEU][hapmap]
rs9621615	1.00[CEU][hapmap]
rs9621619	1.00[EUR][1000 genomes]
rs9621621	1.00[EUR][1000 genomes]
rs9621622	1.00[CEU][hapmap]
rs9621627	1.00[CEU][hapmap]
rs9621628	1.00[EUR][1000 genomes]
rs9621640	1.00[EUR][1000 genomes]
rs9621642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33432400-33449800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr22:33437600-33439200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr22:33437800-33439200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr22:33437800-33439200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr22:33438000-33445000	Weak transcription	Brain Anterior Caudate	brain
6	chr22:33438200-33440000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr22:33438200-33441200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr22:33438600-33441200	Weak transcription	HepG2	liver
9	chr22:33438600-33443800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr22:33438800-33445600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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