Variant report

Variant	rs73885004
Chromosome Location	chr22:33599696-33599697
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:33413961..33415197-chr22:33598824..33600370,12	MCF-7	breast:
2	chr22:33396628..33397150-chr22:33599244..33599757,2	MCF-7	breast:
3	chr22:32774461..32775315-chr22:33599131..33599713,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11913122	1.00[EUR][1000 genomes]
rs11913247	1.00[EUR][1000 genomes]
rs11913820	1.00[EUR][1000 genomes]
rs11913962	1.00[EUR][1000 genomes]
rs11914009	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12158409	1.00[EUR][1000 genomes]
rs12158415	1.00[EUR][1000 genomes]
rs12159214	1.00[EUR][1000 genomes]
rs12166563	1.00[EUR][1000 genomes]
rs12168142	1.00[EUR][1000 genomes]
rs12329983	1.00[EUR][1000 genomes]
rs16991916	1.00[EUR][1000 genomes]
rs16991969	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16992012	1.00[EUR][1000 genomes]
rs2413177	1.00[EUR][1000 genomes]
rs56660136	1.00[EUR][1000 genomes]
rs56784849	1.00[EUR][1000 genomes]
rs57743865	1.00[EUR][1000 genomes]
rs58499026	1.00[EUR][1000 genomes]
rs58653235	1.00[EUR][1000 genomes]
rs59142382	1.00[EUR][1000 genomes]
rs59845765	1.00[EUR][1000 genomes]
rs5994714	1.00[EUR][1000 genomes]
rs5998838	1.00[EUR][1000 genomes]
rs5998840	1.00[EUR][1000 genomes]
rs5998841	1.00[EUR][1000 genomes]
rs5998848	1.00[EUR][1000 genomes]
rs5998853	1.00[EUR][1000 genomes]
rs5998854	1.00[EUR][1000 genomes]
rs5998856	1.00[EUR][1000 genomes]
rs5998857	1.00[EUR][1000 genomes]
rs60578463	1.00[EUR][1000 genomes]
rs6518814	1.00[EUR][1000 genomes]
rs73403398	1.00[EUR][1000 genomes]
rs73405312	1.00[EUR][1000 genomes]
rs741979	1.00[EUR][1000 genomes]
rs743792	1.00[EUR][1000 genomes]
rs8136395	1.00[EUR][1000 genomes]
rs9621619	1.00[EUR][1000 genomes]
rs9621621	1.00[EUR][1000 genomes]
rs9621628	1.00[EUR][1000 genomes]
rs9621640	1.00[EUR][1000 genomes]
rs9621642	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv1056019	chr22:33527873-33657289	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv933455	chr22:33532697-33915429	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33598000-33601000	Enhancers	Primary B cells from peripheral blood	blood
2	chr22:33598200-33600800	Enhancers	Primary B cells from cord blood	blood
3	chr22:33599200-33599800	Enhancers	Adipose Nuclei	Adipose
4	chr22:33599200-33600000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr22:33599200-33600000	Flanking Active TSS	GM12878-XiMat	blood
6	chr22:33599600-33599800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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