Variant report

Variant	rs16991969
Chromosome Location	chr22:33604365-33604366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11089602	1.00[CEU][hapmap]
rs11913122	1.00[EUR][1000 genomes]
rs11913247	1.00[EUR][1000 genomes]
rs11913820	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11913962	1.00[EUR][1000 genomes]
rs11914009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12158409	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12158415	1.00[EUR][1000 genomes]
rs12159214	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12166563	1.00[EUR][1000 genomes]
rs12168142	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12329983	1.00[EUR][1000 genomes]
rs16991916	1.00[EUR][1000 genomes]
rs16992012	1.00[EUR][1000 genomes]
rs16992174	1.00[CEU][hapmap]
rs16992228	1.00[CEU][hapmap]
rs2157200	1.00[CEU][hapmap]
rs2283893	1.00[CEU][hapmap]
rs2413177	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4322933	1.00[CEU][hapmap]
rs56660136	1.00[EUR][1000 genomes]
rs56784849	1.00[EUR][1000 genomes]
rs57743865	1.00[EUR][1000 genomes]
rs58499026	1.00[EUR][1000 genomes]
rs58653235	1.00[EUR][1000 genomes]
rs59142382	1.00[EUR][1000 genomes]
rs59845765	1.00[EUR][1000 genomes]
rs5994713	1.00[CEU][hapmap]
rs5994714	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998836	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs5998838	1.00[EUR][1000 genomes]
rs5998840	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998841	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs5998848	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998849	1.00[CEU][hapmap]
rs5998853	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998854	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs5998856	1.00[EUR][1000 genomes]
rs5998857	1.00[EUR][1000 genomes]
rs5998881	1.00[CEU][hapmap]
rs5998882	1.00[CEU][hapmap]
rs5998883	1.00[CEU][hapmap]
rs5998884	1.00[CEU][hapmap]
rs5998886	1.00[CEU][hapmap]
rs5998887	1.00[CEU][hapmap]
rs5998888	1.00[CEU][hapmap]
rs5998889	1.00[CEU][hapmap]
rs60578463	1.00[EUR][1000 genomes]
rs6518814	1.00[EUR][1000 genomes]
rs7285055	1.00[CEU][hapmap]
rs73403398	1.00[EUR][1000 genomes]
rs73405312	1.00[EUR][1000 genomes]
rs73885004	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs741979	1.00[EUR][1000 genomes]
rs743792	1.00[EUR][1000 genomes]
rs750515	1.00[CEU][hapmap]
rs8135785	1.00[CEU][hapmap]
rs8136395	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8139132	1.00[CEU][hapmap]
rs8139984	1.00[CEU][hapmap]
rs8140876	1.00[CEU][hapmap]
rs8142882	1.00[CEU][hapmap]
rs9621619	1.00[EUR][1000 genomes]
rs9621621	1.00[EUR][1000 genomes]
rs9621622	1.00[CEU][hapmap]
rs9621627	1.00[CEU][hapmap]
rs9621628	1.00[EUR][1000 genomes]
rs9621640	1.00[EUR][1000 genomes]
rs9621642	1.00[EUR][1000 genomes]
rs9680635	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv1056019	chr22:33527873-33657289	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv933455	chr22:33532697-33915429	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1065926	chr22:33602852-33658189	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv544681	chr22:33602852-33658189	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33601000-33606000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr22:33604200-33606400	Weak transcription	GM12878-XiMat	blood

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