Variant report

Variant	rs5998658
Chromosome Location	chr22:33319401-33319402
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1005662	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1005663	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1005664	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10222253	1.00[CEU][hapmap]
rs11089597	1.00[CEU][hapmap]
rs11089602	1.00[CEU][hapmap]
rs1119511	1.00[CEU][hapmap]
rs1119512	1.00[CEU][hapmap]
rs12167310	1.00[CEU][hapmap]
rs12168142	1.00[CEU][hapmap]
rs12170307	1.00[EUR][1000 genomes]
rs130534	1.00[EUR][1000 genomes]
rs1365835	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16991203	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16991580	1.00[CEU][hapmap]
rs1894457	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs5754327	1.00[CEU][hapmap]
rs5998651	0.84[ASW][hapmap];1.00[CEU][hapmap]
rs5998653	1.00[CEU][hapmap]
rs7285055	1.00[CEU][hapmap]
rs7290885	1.00[TSI][hapmap]
rs8140502	1.00[CEU][hapmap]
rs9619309	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9619310	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9619322	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9619323	1.00[CEU][hapmap]
rs9621561	1.00[EUR][1000 genomes]
rs9621566	1.00[CEU][hapmap]
rs9621578	1.00[CEU][hapmap]
rs9621599	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621600	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621606	1.00[CEU][hapmap]
rs9621608	1.00[CEU][hapmap]
rs9621609	1.00[CEU][hapmap]
rs9621610	1.00[CEU][hapmap]
rs9621615	1.00[CEU][hapmap]
rs9621622	1.00[CEU][hapmap]
rs9621627	1.00[CEU][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33313400-33319600	Enhancers	Fetal Lung	lung
2	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:33314200-33323800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr22:33314200-33332200	Weak transcription	HepG2	liver
5	chr22:33315600-33328200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:33316800-33320800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:33317800-33319600	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr22:33318400-33320600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr22:33318600-33319600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr22:33318600-33319600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr22:33318600-33320800	Strong transcription	H1 Cell Line	embryonic stem cell
12	chr22:33319200-33324800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr22:33319200-33333000	Weak transcription	Fetal Brain Male	brain

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