Variant report

Variant	rs12169569
Chromosome Location	chr22:33198583-33198584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:32284948-32287956..22:33190123-33206921	K562	blood:
2	chr22:33159150..33161467-chr22:33197718..33199220,2	MCF-7	breast:
3	chr22:32944078..32945823-chr22:33197718..33200200,2	MCF-7	breast:
4	chr22:33193803..33196091-chr22:33197743..33200134,2	K562	blood:
5	22:32846948-32860159..22:33190123-33206921	K562	blood:
6	chr22:33195652..33199571-chr22:33200330..33212129,15	MCF-7	breast:
7	chr22:32977838..32980005-chr22:33196741..33198694,2	MCF-7	breast:
8	chr22:32922025..32930472-chr22:33196157..33204507,15	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000227813	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000197047	Chromatin interaction
ENSG00000236054	Chromatin interaction
ENSG00000185666	Chromatin interaction

rs_ID	r²[population]
rs10222253	1.00[EUR][1000 genomes]
rs12165603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16991580	1.00[EUR][1000 genomes]
rs7287344	1.00[EUR][1000 genomes]
rs878813	1.00[AMR][1000 genomes]

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33196800-33199600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
2	chr22:33197000-33198600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr22:33197000-33198600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr22:33197000-33199200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr22:33197200-33198600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr22:33197200-33198600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr22:33197200-33198600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:33197200-33198600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
9	chr22:33197200-33198800	Bivalent/Poised TSS	A549	lung
10	chr22:33197200-33199000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr22:33197200-33199200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
12	chr22:33197200-33199400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr22:33197200-33199400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr22:33197200-33199400	Bivalent/Poised TSS	Colonic Mucosa	Colon
15	chr22:33197200-33199400	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
16	chr22:33197200-33199600	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
17	chr22:33197200-33199600	Active TSS	Right Ventricle	heart
18	chr22:33197200-33199800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
19	chr22:33197200-33199800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr22:33197200-33200800	Active TSS	Aorta	Aorta
21	chr22:33197200-33200800	Active TSS	Spleen	Spleen
22	chr22:33197200-33201200	Active TSS	Esophagus	oesophagus
23	chr22:33197400-33198600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr22:33197400-33198600	Active TSS	Adipose Nuclei	Adipose
25	chr22:33197400-33198600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr22:33197400-33198600	Active TSS	Fetal Muscle Trunk	muscle
27	chr22:33197400-33198600	Active TSS	Rectal Smooth Muscle	rectum
28	chr22:33197400-33198800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr22:33197400-33198800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr22:33197400-33198800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
31	chr22:33197400-33198800	Active TSS	Muscle Satellite Cultured Cells	--
32	chr22:33197400-33198800	Active TSS	NH-A	brain
33	chr22:33197400-33198800	Active TSS	Osteobl	bone
34	chr22:33197400-33199000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr22:33197400-33199200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr22:33197400-33199400	Active TSS	Fetal Stomach	stomach
37	chr22:33197400-33199400	Active TSS	NHDF-Ad	bronchial
38	chr22:33197400-33199400	Active TSS	NHLF	lung
39	chr22:33197400-33199600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr22:33197400-33199600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr22:33197400-33199600	Active TSS	Colon Smooth Muscle	Colon
42	chr22:33197400-33199600	Active TSS	HSMM	muscle
43	chr22:33197400-33200000	Active TSS	Brain Angular Gyrus	brain
44	chr22:33197400-33200000	Active TSS	HSMMtube	muscle
45	chr22:33197400-33200200	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr22:33197400-33200200	Active TSS	Brain Anterior Caudate	brain
47	chr22:33197400-33200200	Active TSS	Left Ventricle	heart
48	chr22:33197400-33200400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr22:33197400-33200400	Active TSS	Brain Hippocampus Middle	brain
50	chr22:33197400-33200600	Active TSS	Brain Inferior Temporal Lobe	brain

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