Variant report

Variant	rs9621607
Chromosome Location	chr22:33344750-33344751
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32846948-32860159..22:33339333-33353583	K562	blood:

Variant related genes	Relation type
ENSG00000184459	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10222206	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10222305	0.81[AFR][1000 genomes]
rs11089596	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11089597	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1119511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1119512	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11912124	1.00[EUR][1000 genomes]
rs11914041	1.00[EUR][1000 genomes]
rs12373961	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16991605	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1988647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56076355	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56095662	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs695224	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7364251	1.00[EUR][1000 genomes]
rs7364286	1.00[EUR][1000 genomes]
rs8140502	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9619319	0.95[AFR][1000 genomes]
rs9619320	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9619322	1.00[EUR][1000 genomes]
rs9621606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621608	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621609	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9621610	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9621614	1.00[EUR][1000 genomes]
rs9621615	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33338000-33345200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr22:33340200-33346000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33341600-33349600	Weak transcription	Fetal Brain Male	brain
5	chr22:33343000-33345600	Weak transcription	Fetal Kidney	kidney
6	chr22:33343000-33347000	Enhancers	Fetal Intestine Small	intestine
7	chr22:33343200-33345000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr22:33343200-33345800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr22:33343200-33347400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr22:33343600-33346800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr22:33343600-33353000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr22:33344000-33345000	Weak transcription	Fetal Heart	heart
14	chr22:33344200-33346400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr22:33344200-33360400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr22:33344400-33345400	Weak transcription	Fetal Intestine Large	intestine
17	chr22:33344400-33345800	Weak transcription	Duodenum Mucosa	Duodenum

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