Variant report

Variant	rs9625271
Chromosome Location	chr22:27968298-27968299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12168428	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4239927	1.00[AMR][1000 genomes]
rs45487397	1.00[EUR][1000 genomes]
rs73880587	1.00[AMR][1000 genomes]
rs73880588	1.00[AMR][1000 genomes]
rs9620704	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625259	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625261	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9625263	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834168	chr22:27859692-28061869	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv588877	chr22:27930080-28094845	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27966600-27970000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:27967200-27968400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr22:27967200-27971200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:27967200-27973800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:27967600-27968800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr22:27967600-27969600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr22:27967800-27969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:27967800-27969800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr22:27967800-27972600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr22:27968000-27968400	Weak transcription	Fetal Brain Female	brain
11	chr22:27968000-27969000	Weak transcription	Fetal Brain Male	brain
12	chr22:27968000-27969600	Weak transcription	Fetal Lung	lung
13	chr22:27968200-27968600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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