Variant report

Variant	rs9634260
Chromosome Location	chr12:47546346-47546347
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:47544469..47546961-chr12:47548595..47550725,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10785658	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10881051	0.91[CEU][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10881053	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10881054	0.88[YRI][hapmap]
rs11183755	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs11183756	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11183774	0.81[CEU][hapmap]
rs11612285	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12371765	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs12578367	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12578995	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs12579796	0.91[CEU][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12810420	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12830116	0.91[CEU][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1357933	0.87[EUR][1000 genomes]
rs1357935	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs1404812	0.91[CEU][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1404813	0.80[CEU][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1404814	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1404819	0.91[CEU][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1404820	0.86[CEU][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1404821	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1525444	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1581560	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1880600	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1917658	0.82[EUR][1000 genomes]
rs1917662	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1917663	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1949864	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2091294	0.91[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2091295	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2222609	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2408714	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2408715	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4533118	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4544084	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4598738	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4768141	0.80[EUR][1000 genomes]
rs4768775	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4768777	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs55651541	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7135951	0.82[EUR][1000 genomes]
rs7313938	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7484989	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7958186	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7963822	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7974123	0.93[EUR][1000 genomes]
rs9634310	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469368	chr12:47374908-47675680	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv558784	chr12:47374908-47675680	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv832399	chr12:47502910-47689601	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47527000-47547800	Weak transcription	Ovary	ovary
2	chr12:47535800-47549600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr12:47535800-47554600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:47536000-47549600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr12:47536000-47550000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:47536000-47550200	Weak transcription	Adipose Nuclei	Adipose
7	chr12:47536000-47550200	Weak transcription	Aorta	Aorta
8	chr12:47536000-47578000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:47536200-47564200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:47536400-47549400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr12:47539400-47550000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr12:47540000-47549200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr12:47540000-47549200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr12:47541600-47558400	Weak transcription	NHEK	skin
15	chr12:47541800-47549200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr12:47544600-47549400	Weak transcription	Lung	lung
17	chr12:47545800-47549000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr12:47545800-47549200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:47546200-47547600	Weak transcription	A549	lung

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