Variant report

Variant	rs9635293
Chromosome Location	chr14:97293594-97293595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:97293055..97295755-chr14:97296835..97300397,4	MCF-7	breast:
2	chr14:97293502..97295046-chr14:97299094..97301646,2	MCF-7	breast:
3	chr14:97262876..97266959-chr14:97292166..97296485,5	K562	blood:

Variant related genes	Relation type
ENSG00000100749	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10131963	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147248	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10400776	0.89[ASN][1000 genomes]
rs17094510	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17094552	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17094594	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957136	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145633	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145634	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55657801	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55696631	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56116530	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56165690	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56225078	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57566539	0.89[ASN][1000 genomes]
rs7148950	1.00[ASN][1000 genomes]
rs7149464	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73355679	0.89[EUR][1000 genomes]
rs7494297	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016074	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323953	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv510650	chr14:97238489-97325221	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1052138	chr14:97271794-97322583	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv542180	chr14:97271794-97322583	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1043916	chr14:97275088-97320354	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1051182	chr14:97275088-97337039	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97264800-97321600	Weak transcription	Psoas Muscle	Psoas
2	chr14:97266200-97303200	Weak transcription	Hela-S3	cervix
3	chr14:97271600-97313800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr14:97272400-97293800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:97281400-97299800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:97282600-97300200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:97282800-97301800	Weak transcription	Thymus	Thymus
8	chr14:97283000-97299800	Weak transcription	Fetal Thymus	thymus
9	chr14:97283000-97300800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:97283400-97294200	Weak transcription	Primary T cells from cord blood	blood
11	chr14:97284600-97299000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:97284600-97313800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr14:97286800-97298800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr14:97287000-97301600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr14:97288200-97293800	Weak transcription	Fetal Brain Female	brain
16	chr14:97288200-97294200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:97288200-97303200	Weak transcription	Brain Anterior Caudate	brain
18	chr14:97288200-97314400	Weak transcription	Lung	lung
19	chr14:97288400-97299800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:97289400-97302000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr14:97290600-97293800	Enhancers	NHEK	skin
22	chr14:97290800-97293600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:97291000-97297000	Weak transcription	Osteobl	bone
24	chr14:97291000-97326000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:97291200-97300000	Weak transcription	Adipose Nuclei	Adipose
26	chr14:97291200-97326200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:97291600-97299800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr14:97291600-97302000	Weak transcription	NHLF	lung
29	chr14:97291800-97296000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr14:97292000-97293800	Weak transcription	GM12878-XiMat	blood
31	chr14:97292000-97294000	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr14:97292000-97294400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:97292000-97295800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:97292200-97295200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:97292400-97294000	Enhancers	Brain Germinal Matrix	brain
36	chr14:97292600-97293800	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr14:97292600-97294000	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr14:97292800-97293600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr14:97292800-97298800	Weak transcription	NHDF-Ad	bronchial
40	chr14:97292800-97300800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr14:97293000-97294000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr14:97293000-97300000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr14:97293000-97309000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr14:97293200-97293600	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr14:97293200-97293600	Enhancers	Colon Smooth Muscle	Colon
46	chr14:97293200-97293600	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr14:97293200-97293600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr14:97293200-97293600	Enhancers	A549	lung
49	chr14:97293200-97293600	Enhancers	HMEC	breast
50	chr14:97293200-97293800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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