Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:97352755..97357017-chr14:97358100..97363870,8	K562	blood:
2	chr14:97352755..97355141-chr14:97359581..97361820,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10131963	0.89[ASN][1000 genomes]
rs10147248	0.89[ASN][1000 genomes]
rs10149203	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10149862	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17094552	0.89[ASN][1000 genomes]
rs17094594	0.89[ASN][1000 genomes]
rs1885160	0.81[EUR][1000 genomes]
rs1957136	0.89[ASN][1000 genomes]
rs2145633	0.89[ASN][1000 genomes]
rs2145634	0.89[ASN][1000 genomes]
rs55657801	0.89[ASN][1000 genomes]
rs55696631	0.89[ASN][1000 genomes]
rs56116530	0.89[ASN][1000 genomes]
rs56165690	0.89[ASN][1000 genomes]
rs6575603	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7148950	0.89[ASN][1000 genomes]
rs7149464	0.89[ASN][1000 genomes]
rs7494297	0.89[ASN][1000 genomes]
rs8016074	0.89[ASN][1000 genomes]
rs9635293	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97294000-97362600	Weak transcription	Spleen	Spleen
2	chr14:97303400-97371600	Weak transcription	Ovary	ovary
3	chr14:97325600-97362000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr14:97331000-97378400	Weak transcription	A549	lung
5	chr14:97342800-97367000	Weak transcription	NHEK	skin
6	chr14:97347000-97368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:97348200-97361400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr14:97349200-97367200	Weak transcription	Primary B cells from cord blood	blood
9	chr14:97349200-97367600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:97349200-97377400	Weak transcription	Primary T cells from cord blood	blood
11	chr14:97349400-97369200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:97355200-97363200	Weak transcription	K562	blood
13	chr14:97356000-97361800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:97356000-97376600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:97357600-97362000	Weak transcription	Thymus	Thymus
16	chr14:97360200-97361800	Strong transcription	Dnd41	blood
17	chr14:97360400-97363000	Enhancers	GM12878-XiMat	blood
18	chr14:97361000-97361200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:97361000-97362200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: