Variant report

Variant	rs6575603
Chromosome Location	chr14:97376865-97376866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10131963	0.82[JPT][hapmap]
rs10132960	0.87[ASN][1000 genomes]
rs10149203	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10149862	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12100898	0.87[ASN][1000 genomes]
rs17094594	0.86[JPT][hapmap]
rs17759753	0.87[ASN][1000 genomes]
rs1885159	0.87[ASN][1000 genomes]
rs1885160	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957136	0.86[JPT][hapmap]
rs2145633	0.86[JPT][hapmap]
rs2145634	0.86[JPT][hapmap]
rs28380669	0.87[ASN][1000 genomes]
rs28491543	0.87[ASN][1000 genomes]
rs28709257	0.87[ASN][1000 genomes]
rs57566539	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9635293	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97331000-97378400	Weak transcription	A549	lung
2	chr14:97349200-97377400	Weak transcription	Primary T cells from cord blood	blood
3	chr14:97368600-97391400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:97376400-97378800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:97376600-97377600	Strong transcription	Dnd41	blood
6	chr14:97376600-97377600	Weak transcription	K562	blood
7	chr14:97376600-97379000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:97376800-97377400	ZNF genes & repeats	Spleen	Spleen
9	chr14:97376800-97387600	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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