Variant report
| Variant | rs9637008 |
|---|---|
| Chromosome Location | chr21:18018438-18018439 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11088586 | 0.91[EUR][1000 genomes] |
| rs1116415 | 0.99[EUR][1000 genomes] |
| rs1129247 | 0.99[EUR][1000 genomes] |
| rs11702837 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12626359 | 0.91[EUR][1000 genomes] |
| rs12626360 | 0.98[EUR][1000 genomes] |
| rs12627380 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12627437 | 0.91[EUR][1000 genomes] |
| rs12627532 | 0.98[EUR][1000 genomes] |
| rs13050616 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs13051672 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13052472 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2027623 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2027624 | 0.98[EUR][1000 genomes] |
| rs2027625 | 0.98[EUR][1000 genomes] |
| rs2154727 | 0.99[EUR][1000 genomes] |
| rs2211987 | 0.99[EUR][1000 genomes] |
| rs2211988 | 0.99[EUR][1000 genomes] |
| rs2211990 | 0.99[EUR][1000 genomes] |
| rs2823929 | 0.98[EUR][1000 genomes] |
| rs2823930 | 0.98[EUR][1000 genomes] |
| rs2823931 | 0.98[EUR][1000 genomes] |
| rs2823932 | 0.99[EUR][1000 genomes] |
| rs2823933 | 0.98[EUR][1000 genomes] |
| rs4485639 | 0.99[EUR][1000 genomes] |
| rs4485640 | 0.99[EUR][1000 genomes] |
| rs7279043 | 0.98[EUR][1000 genomes] |
| rs8133801 | 0.99[EUR][1000 genomes] |
| rs8134854 | 0.98[EUR][1000 genomes] |
| rs9980343 | 0.91[EUR][1000 genomes] |
| rs9984100 | 0.98[EUR][1000 genomes] |
| rs9984105 | 0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1064857 | chr21:17628760-18533131 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 345 gene(s) | inside rSNPs | diseases |
| 2 | nsv544382 | chr21:17628760-18533131 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 345 gene(s) | inside rSNPs | diseases |
| 3 | nsv834052 | chr21:17967385-18142224 | Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9637008 | AP000473.8 | cis | Thyroid | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:18008000-18019000 | Weak transcription | Fetal Brain Male | brain |
