Variant report

Variant	rs9637480
Chromosome Location	chr3:60920546-60920547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11130799	0.89[EUR][1000 genomes]
rs11130800	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11130801	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11713112	0.83[EUR][1000 genomes]
rs12493259	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1562520	0.86[EUR][1000 genomes]
rs3952441	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4974249	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs62251572	0.83[EUR][1000 genomes]
rs62267330	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs66887095	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7627681	0.87[EUR][1000 genomes]
rs9851616	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60918600-60920600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:60918600-60921000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:60919600-60920600	Enhancers	Brain Germinal Matrix	brain
4	chr3:60919800-60921000	Weak transcription	HMEC	breast
5	chr3:60920000-60922200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:60920400-60922200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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