Variant report

Variant	rs4974249
Chromosome Location	chr3:60903111-60903112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11130793	0.91[ASW][hapmap];1.00[YRI][hapmap]
rs11130794	0.90[ASW][hapmap];1.00[YRI][hapmap]
rs11130795	0.91[ASW][hapmap];1.00[YRI][hapmap]
rs11130799	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130800	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11130801	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11130804	0.82[JPT][hapmap]
rs11713112	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12493259	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1562520	1.00[CEU][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3952441	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4974251	0.81[CHB][hapmap]
rs4974254	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs62251572	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62251573	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62267330	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66887095	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9637480	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9821525	0.91[ASW][hapmap];1.00[YRI][hapmap]
rs9827976	0.81[CHB][hapmap]
rs9851616	0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9879276	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60902600-60903200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:60902600-60906600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:60902800-60903200	Enhancers	Ovary	ovary
4	chr3:60902800-60903400	Enhancers	Fetal Muscle Leg	muscle
5	chr3:60903000-60903400	Enhancers	Brain Germinal Matrix	brain
6	chr3:60903000-60903400	Enhancers	Fetal Brain Male	brain

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