Variant report

Variant	rs4974251
Chromosome Location	chr3:60921707-60921708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11714964	0.87[EUR][1000 genomes]
rs11924304	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13094263	0.87[EUR][1000 genomes]
rs1349031	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1868225	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868226	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868227	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868228	0.95[EUR][1000 genomes]
rs2044611	0.92[CEU][hapmap]
rs2044613	0.92[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap]
rs4974249	0.81[CHB][hapmap]
rs4974250	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56078561	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6446164	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6446165	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6789015	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6791911	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6799902	0.92[EUR][1000 genomes]
rs7622539	0.87[EUR][1000 genomes]
rs7631028	1.00[CEU][hapmap]
rs7636450	0.95[EUR][1000 genomes]
rs7637834	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7645482	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs7646138	0.90[EUR][1000 genomes]
rs7652906	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9754838	0.96[CEU][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9757313	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9819076	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9827976	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9852553	0.96[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9857057	0.96[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9859690	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9867960	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9876711	0.96[CEU][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9876863	0.80[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9990051	1.00[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60920000-60922200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:60920400-60922200	Enhancers	NHEK	skin
3	chr3:60920600-60922200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:60920600-60922200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:60921000-60922000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:60921000-60922000	Enhancers	Osteobl	bone
7	chr3:60921000-60922200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:60921200-60922000	Enhancers	NH-A	brain
9	chr3:60921200-60922000	Enhancers	NHDF-Ad	bronchial
10	chr3:60921400-60921800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:60921400-60921800	Enhancers	HSMM	muscle

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