Variant report

Variant	rs1868228
Chromosome Location	chr3:60902142-60902143
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11714964	0.87[EUR][1000 genomes]
rs11924304	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13094263	0.84[EUR][1000 genomes]
rs1349031	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17064185	0.88[AFR][1000 genomes]
rs1868225	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1868226	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1868227	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4974250	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4974251	0.95[EUR][1000 genomes]
rs56078561	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6446164	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6446165	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6789015	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6791911	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6799902	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7622539	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7636450	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7637834	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7645482	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7646138	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7652906	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9754838	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9757313	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9819076	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9827976	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9852553	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9857057	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9859690	0.87[EUR][1000 genomes]
rs9867960	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9876711	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9876863	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9990051	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60885800-60902200	Weak transcription	Ovary	ovary
2	chr3:60902000-60902600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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