Variant report

Variant	rs9859690
Chromosome Location	chr3:60931753-60931754
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11130800	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs11130801	0.82[ASN][1000 genomes]
rs11714964	0.81[EUR][1000 genomes]
rs11924304	0.96[CEU][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11926529	0.85[YRI][hapmap]
rs12493259	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs1349031	0.86[EUR][1000 genomes]
rs1562520	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs1868225	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1868226	0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1868227	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1868228	0.87[EUR][1000 genomes]
rs2044611	0.93[CEU][hapmap]
rs2044613	0.92[CEU][hapmap]
rs3952441	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs4974250	0.90[EUR][1000 genomes]
rs4974251	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4974254	0.86[CHB][hapmap]
rs56078561	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62267330	0.80[ASN][1000 genomes]
rs6446164	0.82[EUR][1000 genomes]
rs6446165	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66887095	0.80[ASN][1000 genomes]
rs6789015	0.87[EUR][1000 genomes]
rs6791911	0.92[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs6799902	0.84[EUR][1000 genomes]
rs7631028	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs7634868	0.85[YRI][hapmap]
rs7636450	0.87[EUR][1000 genomes]
rs7637834	0.87[EUR][1000 genomes]
rs7645482	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs7646138	0.82[EUR][1000 genomes]
rs7652906	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9754838	0.96[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9757313	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9808931	0.89[YRI][hapmap]
rs9819076	0.93[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9827976	0.96[CEU][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9851616	0.81[CHB][hapmap]
rs9852553	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9857057	0.96[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9867960	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9876711	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9876863	0.81[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9990051	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60930800-60938800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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