Variant report

Variant	rs13094263
Chromosome Location	chr3:60919588-60919589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11924304	0.88[EUR][1000 genomes]
rs1349031	0.83[EUR][1000 genomes]
rs1562519	0.93[ASN][1000 genomes]
rs1868225	0.88[EUR][1000 genomes]
rs1868226	0.87[EUR][1000 genomes]
rs1868227	0.88[EUR][1000 genomes]
rs1868228	0.84[EUR][1000 genomes]
rs35558909	0.98[ASN][1000 genomes]
rs35675876	0.96[ASN][1000 genomes]
rs4974250	0.87[EUR][1000 genomes]
rs4974251	0.87[EUR][1000 genomes]
rs62251574	0.85[AMR][1000 genomes]
rs6446164	0.80[EUR][1000 genomes]
rs6446165	0.84[EUR][1000 genomes]
rs6789015	0.84[EUR][1000 genomes]
rs6791911	0.84[EUR][1000 genomes]
rs6799902	0.81[EUR][1000 genomes]
rs7636450	0.84[EUR][1000 genomes]
rs7637834	0.84[EUR][1000 genomes]
rs7645482	0.82[EUR][1000 genomes]
rs7646138	0.83[EUR][1000 genomes]
rs7652906	0.88[EUR][1000 genomes]
rs9754838	0.88[EUR][1000 genomes]
rs9757313	0.88[EUR][1000 genomes]
rs9819076	0.87[EUR][1000 genomes]
rs9827976	0.82[EUR][1000 genomes]
rs9852553	0.88[EUR][1000 genomes]
rs9857057	0.88[EUR][1000 genomes]
rs9867960	0.88[EUR][1000 genomes]
rs9876711	0.88[EUR][1000 genomes]
rs9876863	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60917800-60919800	Enhancers	HMEC	breast
2	chr3:60918600-60920600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:60918600-60921000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:60919000-60920400	Weak transcription	NHEK	skin
5	chr3:60919400-60919600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:60919400-60919800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links