Variant report

Variant	rs9637977
Chromosome Location	chr6:15958946-15958947
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10456779	0.91[EUR][1000 genomes]
rs10949324	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10949325	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10949326	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1539422	0.81[CEU][hapmap]
rs1891517	0.89[CEU][hapmap]
rs2327929	0.91[ASN][1000 genomes]
rs2327930	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs6459440	0.80[CEU][hapmap]
rs6935987	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs7357026	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9358075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9464846	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3399670	chr6:15958795-15958966	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15951000-15961600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:15954000-15961400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:15954000-15961400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15954000-15961600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:15954200-15961400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:15954200-15961600	Weak transcription	Left Ventricle	heart
7	chr6:15955600-15959000	Enhancers	K562	blood
8	chr6:15956600-15960200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:15957000-15960200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:15957000-15962200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:15957000-15962400	Weak transcription	NHLF	lung
12	chr6:15957200-15961400	Weak transcription	Spleen	Spleen
13	chr6:15957400-15960200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:15957800-15961400	Weak transcription	HUVEC	blood vessel
15	chr6:15958000-15960000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:15958000-15961400	Weak transcription	Lung	lung
17	chr6:15958800-15959000	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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