Variant report

Variant	rs964356
Chromosome Location	chr2:206250241-206250242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2137177	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2668143	0.95[EUR][1000 genomes]
rs849196	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs849197	0.84[EUR][1000 genomes]
rs849199	0.83[EUR][1000 genomes]
rs849204	0.84[EUR][1000 genomes]
rs849205	0.84[EUR][1000 genomes]
rs849212	0.83[EUR][1000 genomes]
rs964355	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv962519	chr2:206239854-206250466	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv584244	chr2:206247450-206378392	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206249000-206250800	Weak transcription	NHDF-Ad	bronchial
2	chr2:206249400-206252400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:206250200-206252200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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