Variant report

Variant	rs9643589
Chromosome Location	chr8:50239306-50239307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:50239273-50239479	MCF10A-Er-Src	breast:	n/a	chr8:50239345-50239356 chr8:50239349-50239358

Variant related genes	Relation type
RN7SKP294	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10808760	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10957382	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12548812	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708031	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13256466	0.84[ASN][1000 genomes]
rs13261521	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13262902	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1356754	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1356755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1383274	0.84[ASN][1000 genomes]
rs1383276	0.84[ASN][1000 genomes]
rs1383279	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1480388	0.84[ASN][1000 genomes]
rs1480389	0.84[ASN][1000 genomes]
rs1480390	0.84[ASN][1000 genomes]
rs1519824	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1554378	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1585895	0.84[ASN][1000 genomes]
rs1842403	0.84[ASN][1000 genomes]
rs4427188	0.84[ASN][1000 genomes]
rs6985247	0.87[ASN][1000 genomes]
rs7001422	0.84[ASN][1000 genomes]
rs7015074	0.81[ASN][1000 genomes]
rs73678572	0.84[ASN][1000 genomes]
rs7832761	0.84[ASN][1000 genomes]
rs9643588	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9792367	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890855	chr8:50109365-50252962	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv890856	chr8:50133485-50272497	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv890857	chr8:50133485-50469764	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv890858	chr8:50219675-50532935	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv971591	chr8:50231027-50243826	Inactive region	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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