Variant report

Variant	rs964504
Chromosome Location	chr4:103349049-103349050
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12513257	0.80[EUR][1000 genomes]
rs2045798	0.90[ASN][1000 genomes]
rs2903280	0.90[ASN][1000 genomes]
rs34197129	0.87[GIH][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes]
rs6533013	0.90[ASN][1000 genomes]
rs6533014	0.91[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs964503	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs9996947	0.87[GIH][hapmap];0.80[TSI][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs964504	ADH1A	cis	parietal	SCAN
rs964504	SLC39A8	cis	parietal	SCAN
rs964504	TSPAN5	cis	parietal	SCAN
rs964504	SLC39A8	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103337800-103349800	Weak transcription	NHEK	skin
2	chr4:103342400-103350800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:103342600-103350400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:103345000-103350400	Weak transcription	Dnd41	blood
5	chr4:103348200-103350600	Enhancers	Hela-S3	cervix
6	chr4:103348200-103351800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:103348400-103349200	Enhancers	HepG2	liver
8	chr4:103348800-103351600	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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