Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103265687..103268296-chr4:103337428..103340297,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10019247	0.88[ASN][1000 genomes]
rs11097780	0.86[ASN][1000 genomes]
rs1117520	0.94[JPT][hapmap]
rs12500141	0.86[ASN][1000 genomes]
rs12505568	0.90[ASN][1000 genomes]
rs12510124	0.91[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs12513257	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13104988	0.90[ASN][1000 genomes]
rs13114804	0.86[ASN][1000 genomes]
rs13147260	0.87[ASN][1000 genomes]
rs1462950	0.94[JPT][hapmap]
rs1462952	0.94[JPT][hapmap]
rs1870952	0.94[JPT][hapmap]
rs4699026	0.91[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs4699027	0.98[ASN][1000 genomes]
rs62328503	0.98[ASN][1000 genomes]
rs6814302	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs6856314	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs964504	0.87[GIH][hapmap];0.80[TSI][hapmap];0.80[EUR][1000 genomes]
rs9996947	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs34197129	SLC39A8	cis	cerebellum	SCAN
rs34197129	SLC39A8	cis	parietal	SCAN
rs34197129	SLC39A8	cis	multi-tissue	Pritchard
rs34197129	DNAJB14	cis	cerebellum	SCAN
rs34197129	ADH1A	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103325000-103341600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:103337400-103338000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:103337400-103338400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr4:103337600-103338000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:103337600-103338400	Enhancers	Stomach Mucosa	stomach
6	chr4:103337800-103338400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:103337800-103349800	Weak transcription	NHEK	skin

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