Variant report

Variant	rs12510124
Chromosome Location	chr4:103337685-103337686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103265687..103268296-chr4:103337428..103340297,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10008684	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10019247	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097776	0.84[EUR][1000 genomes]
rs11097780	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1117520	0.90[CEU][hapmap];0.94[JPT][hapmap]
rs1117522	0.86[EUR][1000 genomes]
rs1159788	0.86[EUR][1000 genomes]
rs11728286	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11730379	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11730944	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11730958	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11935847	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12499248	0.91[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs12500141	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12505568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513257	0.90[ASN][1000 genomes]
rs13104988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107285	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13112930	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13114804	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13125848	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13147260	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1381893	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs1381894	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1381895	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1381897	0.82[AMR][1000 genomes]
rs1381899	0.86[EUR][1000 genomes]
rs1462943	0.95[CEU][hapmap];0.92[GIH][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs1462948	0.86[EUR][1000 genomes]
rs1462949	0.85[EUR][1000 genomes]
rs1462950	0.95[CEU][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1462951	0.86[EUR][1000 genomes]
rs1462952	0.95[CEU][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1599684	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1599685	0.86[EUR][1000 genomes]
rs1599686	0.87[AMR][1000 genomes]
rs1870952	0.87[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs2054393	0.95[CEU][hapmap];0.92[GIH][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs2086004	0.86[EUR][1000 genomes]
rs2126625	0.84[EUR][1000 genomes]
rs34197129	0.91[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs34835832	0.83[EUR][1000 genomes]
rs4699012	0.87[GIH][hapmap]
rs4699019	0.85[EUR][1000 genomes]
rs4699021	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4699024	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4699026	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699027	0.88[ASN][1000 genomes]
rs62328503	0.88[ASN][1000 genomes]
rs6533014	0.90[GIH][hapmap]
rs6814302	0.86[CEU][hapmap];0.80[CHB][hapmap];0.86[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs6835467	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6843751	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6844796	0.80[EUR][1000 genomes]
rs6848517	0.81[CEU][hapmap]
rs6856314	0.89[JPT][hapmap]
rs7436937	0.91[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap]
rs7657947	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7661593	0.86[EUR][1000 genomes]
rs7683109	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs962399	0.86[EUR][1000 genomes]
rs984055	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9996947	0.91[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12510124	GSTCD	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103325000-103341600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:103333400-103337800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:103337400-103337800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:103337400-103337800	Enhancers	NHEK	skin
5	chr4:103337400-103338000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:103337400-103338400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr4:103337600-103338000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:103337600-103338400	Enhancers	Stomach Mucosa	stomach

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