Variant report

Variant	rs4699027
Chromosome Location	chr4:103341701-103341702
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103264289..103267173-chr4:103340178..103342964,2	MCF-7	breast:
2	chr4:103339972..103342129-chr4:103346957..103349862,2	MCF-7	breast:
3	chr4:103341459..103342393-chr4:103352200..103353244,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138821	Chromatin interaction
ENSG00000248161	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10019247	0.86[ASN][1000 genomes]
rs10516492	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10516493	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11097775	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11097777	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11097779	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11097780	0.84[ASN][1000 genomes]
rs12500141	0.84[ASN][1000 genomes]
rs12505568	0.88[ASN][1000 genomes]
rs12508086	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12508121	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12510124	0.88[ASN][1000 genomes]
rs12513257	0.98[ASN][1000 genomes]
rs13104988	0.88[ASN][1000 genomes]
rs13114804	0.84[ASN][1000 genomes]
rs13147260	0.85[ASN][1000 genomes]
rs1462945	0.92[AMR][1000 genomes]
rs17032552	0.91[AMR][1000 genomes]
rs34197129	0.98[ASN][1000 genomes]
rs34927061	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4146611	0.91[AMR][1000 genomes]
rs4356914	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4594728	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4699020	0.93[AMR][1000 genomes]
rs4699026	0.88[ASN][1000 genomes]
rs55801262	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56202913	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56344531	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62328212	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62328503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6856314	0.81[EUR][1000 genomes]
rs7695249	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103337800-103349800	Weak transcription	NHEK	skin
2	chr4:103338000-103342200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:103340600-103342200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:103341400-103343200	Enhancers	Hela-S3	cervix
5	chr4:103341600-103342200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:103341600-103342200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:103341600-103342200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:103341600-103342400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:103341600-103342400	Enhancers	Liver	Liver
10	chr4:103341600-103342400	Enhancers	HMEC	breast

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